| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1058102 = | 262 (0.730) | 18 (0.060) | 12/144 | NT | 6.9% | intergenic (+143/+64) | slyA_2/atl_1 | Transcriptional regulator SlyA/Bifunctional autolysin |
| ? | USA300TCH1516_ALE | 1058152 = | 250 (0.780) | intergenic (+193/+14) | slyA_2/atl_1 | Transcriptional regulator SlyA/Bifunctional autolysin | |||||
GGCAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1058198‑1058102‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgatccTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCA > USA300TCH1516_ALE/1058152‑1058241 GGCAAATACTTCTACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTT < 2:4531169/91‑1GGCAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTT < 2:2129806/91‑1 GCAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTT > 2:1315569/1‑91 GCAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTT < 1:3261714/91‑1 GCAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTT > 2:2497395/1‑91 GCAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTT < 2:2180780/91‑1 CAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTG < 2:5491769/91‑1 CAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTG < 1:1261509/91‑1 CAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTG < 2:3031735/91‑1 CAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTG < 1:6018003/91‑1 CAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTG < 1:5086226/91‑1 CAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTG < 1:5393789/91‑1 CAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGACCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTc > 2:4489155/1‑90 AAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGA > 1:1415150/1‑91 AAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGA > 2:4438871/1‑91 AAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGA < 2:1559709/91‑1 AAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGA < 2:3787118/91‑1 AAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGA > 1:4031190/1‑91 AAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGA > 1:4104957/1‑91 AATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGAT < 1:950979/91‑1 AATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGAT < 1:5994538/91‑1 AATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGAT < 2:3031296/91‑1 AATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGAT < 2:397213/91‑1 AATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGAT < 2:6544495/91‑1 AATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGAT < 2:6833708/91‑1 AATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCAGGGGGGATGACCTTTGAT < 2:5451936/91‑1 ATACTTCGACATCCCACAATATAGATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATC < 2:2696363/91‑1 ATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATC < 2:4337058/91‑1 ATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATC < 2:957643/91‑1 TACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCC < 1:876785/91‑1 TACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCC < 2:6579969/91‑1 TACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCC < 1:1368286/91‑1 TACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCC > 2:4287514/1‑91 TACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCC < 1:3299890/91‑1 AGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGA > 2:2570325/1‑91 TCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACT > 2:6136173/1‑91 TCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACT > 1:4847725/1‑91 CATCCCCCACTATCAATCATGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTT > 2:2142304/1‑91 ATCCCCCACTATCAATCATGGGGGATGACCTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTC > 2:2102885/1‑91 ATCCCCCACTATCAATCATGGGGGATGACCTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTC > 1:1685369/1‑91 ATCCCCCACTATCAATCATGGGGGATGACCTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTC > 2:5365670/1‑91 TCCCCCACTATCAATCATGGGGGATAACCTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGACGTATTTGCTGACTTCG > 2:6657458/1‑91 CCCCCACTATCAATCATGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGC > 1:2819323/1‑91 CCCCCACTATCAATCATGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGC < 2:2819323/91‑1 CCCCCACTATCAATCATGGGGGATGACCTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGG > 1:6438703/1‑66 CCCCCACTATCAATCATGGGGGATGACCTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGG < 2:6438703/66‑1 CCCCACTATCAATCATGGGGGATGACCTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCC > 2:1929325/1‑91 CCCACTATCAATCATGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCA > 1:2021318/1‑91 TATCAATCATGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTT > 2:3424543/1‑91 TATCAATCATGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTT > 2:6927272/1‑91 TATCAATCATAGGGGATGACCTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTT > 2:5832109/1‑91 TGGGGGATGACCTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTA < 1:2102885/91‑1 TTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGAT < 2:3004506/91‑1 TTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGAT > 2:6161479/1‑91 TTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGAT > 2:6161498/1‑91 TTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATT > 1:1172514/1‑91 TTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATT < 1:6106721/91‑1 TTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATT < 1:6106546/91‑1 tgcTCCTATGTTCATGTGGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTT < 2:1785006/88‑1 TGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTT > 2:903232/1‑91 TGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTT < 2:2916470/91‑1 GATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTT < 1:6045146/91‑1 GATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTT < 1:705019/91‑1 GATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTT < 2:4413723/91‑1 GATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTT < 1:1445721/91‑1 GATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTT < 1:2866535/91‑1 GATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTT < 2:4114513/91‑1 ATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTA < 1:6668336/91‑1 ATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTA > 2:2629847/1‑91 ATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTA > 1:84162/1‑91 ATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTA < 1:1220965/91‑1 ATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTA < 1:6668355/91‑1 TCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAG > 1:1368363/1‑91 CCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGC > 1:3928360/1‑91 CCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGC > 2:5506527/1‑91 CTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCA > 2:6290276/1‑91 CTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCA < 2:6456631/91‑1 CTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCA < 2:6623119/91‑1 CTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTGCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCA < 2:4101095/91‑1 GGCAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1058198‑1058102‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgatccTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCA > USA300TCH1516_ALE/1058152‑1058241 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |