| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2696548 = | 357 (1.000) | 11 (0.040) | 9/140 | NT | 3.4% | intergenic (+100/‑140) | USA300HOU_RS13875/copA | hypothetical protein/Copper‑exporting P‑type ATPase A |
| ? | USA300TCH1516_ALE | 2696587 = | 310 (0.990) | intergenic (+139/‑101) | USA300HOU_RS13875/copA | hypothetical protein/Copper‑exporting P‑type ATPase A | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2696647‑2696548‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGG > USA300TCH1516_ALE/2696587‑2696676 ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC > 1:534906/1‑91ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC > 2:5940325/1‑91ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC > 2:206186/1‑91ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC > 1:535466/1‑91ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC < 1:1780730/91‑1 CCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACA > 2:2828332/1‑91 CCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACA < 1:360111/91‑1 CCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACA > 1:4443001/1‑91 CCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAAT > 1:1486251/1‑91 CCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAAT < 1:4007977/91‑1 CCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATC > 2:55268/1‑91 CCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATC < 2:6855058/91‑1 CCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATC > 1:1309163/1‑91 CCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATC > 1:5021565/1‑91 CCTATAGGAATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATC < 2:3940930/91‑1 CTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCT > 1:2278168/1‑91 CTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCT > 1:4874931/1‑91 CTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCT < 2:6241610/91‑1 CTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGACAGATTGCCGTGCAAACATTGCACAACACTCT > 1:6486361/1‑91 TATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTC < 1:4658735/91‑1 TATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTC < 2:2860480/91‑1 TATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTC < 1:5689164/91‑1 ATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCT < 1:2965832/91‑1 ATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCT < 1:5985425/91‑1 ATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCT > 1:4001023/1‑91 ATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCT < 2:5949398/91‑1 ATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCT < 1:2966909/91‑1 ATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCT < 2:4731983/91‑1 ATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCT > 1:1062805/1‑91 ATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCT > 1:1062010/1‑91 TAGGTATATGAGTCAAGCGTTGCGTTTTAGTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTACACAACAATCTCTC > 1:6421277/1‑91 TAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTC < 2:240527/91‑1 TAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTC < 2:450924/91‑1 tGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT < 2:5506517/90‑1 AGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT < 1:1605662/91‑1 AGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT < 1:3669278/91‑1 AGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT < 1:737595/91‑1 AGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT > 2:1291885/1‑91 ATATAAGTCAATCGTTGCGTTTTTCTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAGCCATTGCACAACAATCTCTCTTCTT > 2:1586607/1‑91 GCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTA < 2:3093639/91‑1 GCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGTTGTGCAATGTTTGCACAGCAATCTCTCTTTTTCTTTTTAAAATTGGTA < 2:6228397/91‑1 GAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATA > 1:6672449/1‑91 AGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCT > 1:3499422/1‑91 GAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGCAAAACGCAACGATTGACTTATATACCTATA > 1:5383758/1‑91 GATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGG > 1:3786040/1‑91 TTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGG > 2:3120967/1‑91 GCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGT > 1:213074/1‑91 CCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTA > 1:6260520/1‑91 CCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTA > 2:6707786/1‑91 TTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTG > 1:4397352/1‑91 CACGACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAA < 2:3503811/91‑1 CACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAA > 2:674997/1‑91 CACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAA > 2:673959/1‑91 CACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAA > 2:672424/1‑91 AATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGA < 1:2447371/91‑1 AATCTCTCTTTTTCTTTATAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGA > 1:5290729/1‑91 ATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAA > 1:1719036/1‑91 ATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAA > 1:6539001/1‑91 ATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAA < 1:4109934/91‑1 TCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAAT > 1:6670610/1‑91 TCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAAT < 2:3373985/91‑1 TCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAAT < 1:2614467/91‑1 TCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAAT < 1:3915946/91‑1 CTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATC > 1:2466753/1‑91 CTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATC < 1:6241610/91‑1 CTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATC > 1:2466765/1‑91 CTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATC < 1:5949398/91‑1 CTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATC < 1:1754952/91‑1 TCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCA < 2:5554777/91‑1 TCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCA > 2:1496487/1‑91 TCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCA < 2:1018213/91‑1 CTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCAC > 1:6446567/1‑91 TCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACA > 2:5143075/1‑91 TCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACA < 2:560254/91‑1 TCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACA < 2:560778/91‑1 TCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACA > 2:6129680/1‑91 TCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACA < 1:5456071/91‑1 TCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACA > 1:271661/1‑91 TCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACA > 2:6887446/1‑91 CTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAG > 2:102961/1‑91 CTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAG > 2:102934/1‑91 CTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAG < 1:1061367/91‑1 CTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAG < 1:4557103/91‑1 CTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAG < 1:2901992/91‑1 TTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGG > 2:2733391/1‑91 TTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGG < 2:1970154/91‑1 TTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGG < 2:1208784/91‑1 TTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGG > 2:84845/1‑91 ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2696647‑2696548‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGG > USA300TCH1516_ALE/2696587‑2696676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |