| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2863074 | 435 (1.220) | 6 (0.020) | 6/150 | NT | 1.5% | intergenic (+44/+16) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2864026 | NA (NA) | intergenic (‑439/‑19) | USA300HOU_RS14670/USA300HOU_RS14675 | hypothetical protein/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2862980‑2863074‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < USA300TCH1516_ALE/2864026‑2863937 ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC > 2:5175666/1‑91ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC > 1:4361170/1‑91ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC > 2:4701483/1‑91ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC > 2:1401078/1‑91ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC < 1:6067364/91‑1ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC > 2:1232397/1‑91ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC < 2:1044064/91‑1 TGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT < 1:4223644/91‑1 TGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT > 1:3189000/1‑91 TGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT > 2:6075943/1‑91 TGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT < 2:3227995/91‑1 TGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT < 1:6206239/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:1380136/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 1:3131065/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 1:4800850/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:3178135/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:5056798/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:5466295/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:6428975/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:6596034/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGAGTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 1:6729436/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGACTTATAAAAAAGCCGTTGGTCTCTTCGAAACGACGGCTT < 1:6729891/91‑1 GAGTTTCATCGAAGATGATAAACATGTCCAGCTTAATTTGACAATATAAAGATTTATAAAATCGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:6773200/91‑1 AGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTT > 1:76067/1‑91 AGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTT > 2:260560/1‑91 AGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTT < 2:2567578/91‑1 AGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTT > 1:1359212/1‑91 AGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTT < 1:2894097/91‑1 AGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTT > 1:1776441/1‑91 GTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT < 2:5883343/91‑1 GTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT < 1:1478371/91‑1 GTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT > 2:5500520/1‑91 GTTTCATCGAAGATGATAAACTTGCCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT > 1:1580508/1‑91 ACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGT > 1:4835386/1‑91 GCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCAT > 2:2735963/1‑91 CCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATA > 1:4713340/1‑91 GTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAA > 2:3909628/1‑91 GGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATAC > 1:4315619/1‑91 GTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACT > 2:5279044/1‑91 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT > 2:2498122/1‑91 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT > 2:4411421/1‑91 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT < 1:3529695/91‑1 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT > 1:1051547/1‑91 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT < 1:5743672/91‑1 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT > 1:1187682/1‑91 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA < 2:2380582/91‑1 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA > 2:368970/1‑91 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA < 2:4805849/91‑1 GGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTAT > 1:606895/1‑91 GGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTAT > 1:612508/1‑91 GGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTAT < 1:5968445/91‑1 GGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTAT > 1:6717675/1‑91 GGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTAT < 1:4965991/91‑1 GGCTTTTTTATAAATCTTTAGATTGTCAAATAAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTAT > 1:6822733/1‑91 GCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATA < 1:4319215/91‑1 GCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATA < 1:4523124/91‑1 GCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATA < 1:1462305/91‑1 CTTTTTTCTAAATCTCTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAA < 2:5397734/91‑1 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC > 1:4877955/1‑91 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC > 2:1719560/1‑91 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC < 2:2680529/91‑1 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACC > 2:1295066/1‑91 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACC < 1:1050388/91‑1 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACC < 1:5909018/91‑1 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACC > 1:2896321/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCGAATGGTGTTCTATAACat > 1:5837310/1‑89 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 2:447117/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:3741148/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:138976/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:116313/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 2:4819746/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:138385/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 2:5200435/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:1270322/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 1:188667/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 1:4126335/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 1:3261363/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 1:6118597/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:2035114/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 2:4129028/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 2:1616048/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 2:2917929/91‑1 TTTTATAAATCTTTAGAGTGTCAAATTAAGCTGGACAAGTTTATCATTTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 1:5304588/1‑91 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA > 2:1511074/1‑91 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA > 1:1872008/1‑91 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 2:1115071/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 1:1953689/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 2:2584892/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 1:2398941/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 1:242477/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA > 1:4769274/1‑91 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 2:4131117/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGATTATCATCTTAGATGAAACTCAAAAATACTTCCAATGGTGTTCTATAACCTA < 2:312654/91‑1 ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2862980‑2863074‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < USA300TCH1516_ALE/2864026‑2863937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |