| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 64 | 914 (0.700) | 27 (0.040) +TTGTTATATTAAGTTTATTATAGCACTTTAAAT |
14/94 | NT | 9.2% | intergenic (–/‑168) | –/repA | –/replication protein A |
| ? | CP000731 | = 27041 | 0 (0.000) | intergenic (‑194/–) | USA300HOU_pUSA300HOUMR0033/– | partitioning protein/– | |||||
AATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000731/15‑64‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTTT < CP000731/27041‑27003 ||||||||||||||||||||||||||||||||| AATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTAT > 1:484315/1‑91 AAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAA > 1:6370360/1‑91 TATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAA > 1:3056699/1‑91 AACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATAT > 2:6352037/1‑91 ACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATA > 1:1038172/1‑91 ACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATA > 1:1037870/1‑91 ACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATA > 2:4072485/1‑91 ACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATA > 1:266505/1‑91 AAACCCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTT > 2:6800796/1‑91 AACCCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTATGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTT > 2:4697673/1‑91 AACCCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTT > 1:2381532/1‑91 CCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATC > 1:1428851/1‑91 CCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATC > 2:172848/1‑91 CCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAACATAGCTTTATCA > 2:4616794/1‑91 CAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAA > 1:875129/1‑91 CAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAA > 2:4604982/1‑91 CAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAA > 1:411456/1‑91 CAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAA > 1:2927540/1‑91 CAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAA > 1:3147947/1‑91 CAACTACTGGCAATAGCCGGGGTTTTTGTTATATTAAGTTGATTATAGCACTTTAAATAAACTTATAAACGGGAAAATATAGCTTTACCAA > 1:2236181/1‑91 AACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAG > 1:678781/1‑91 ACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGG > 1:6695954/1‑91 ACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGG > 2:5690449/1‑91 ACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGG > 1:4149062/1‑91 ACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTAATCAAGG > 1:5529296/1‑91 ACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTT > 1:595189/1‑91 CTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTTT > 1:5093965/1‑91 ||||||||||||||||||||||||||||||||| AATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000731/15‑64‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTTT < CP000731/27041‑27003 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |