| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,372,419 | C→T | 5.3% | intergenic (+170/+22) | USA300TCH1516_02262 → / ← pbuG | hypothetical protein/Guanine/hypoxanthine permease PbuG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,372,419 | 0 | C | T | 5.3% | 1507.7 / 47.7 | 442 | intergenic (+170/+22) | USA300TCH1516_02262/pbuG | hypothetical protein/Guanine/hypoxanthine permease PbuG |
| Reads supporting (aligned to +/- strand): ref base C (203/215); new base T (20/4); total (223/219) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.16e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01 | |||||||||||
Only 100 of 454 total aligned reads displayed.
ATATTTAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTC > USA300TCH1516_ALE/2372329‑2372509 | atatTTAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGc > 1:5277138/1‑91 (MQ=255) atTTAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAg < 1:5210732/91‑1 (MQ=255) atTTAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAg < 1:1955740/91‑1 (MQ=255) tttAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGt > 1:5110373/1‑91 (MQ=255) ttAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTc < 1:3908608/91‑1 (MQ=255) ttAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTc < 2:4006149/91‑1 (MQ=255) ttAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTc < 1:5883963/91‑1 (MQ=255) tAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTGCCAATGATTGGTAGTCg < 2:6086147/91‑1 (MQ=38) tAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTCATTTTATCCTTGCTTCAAAGAAAAAAACGACTACCGATCATTGTCAGTCg > 1:5811408/1‑91 (MQ=255) aaaGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑t < 1:459450/91‑1 (MQ=255) aaGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑tt > 2:5450619/1‑91 (MQ=255) aGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑ttt > 2:3510909/1‑91 (MQ=255) gACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑tttt < 1:5434057/91‑1 (MQ=255) aCATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑ttttt < 2:4812841/91‑1 (MQ=255) aCATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑ttttt < 1:6784678/91‑1 (MQ=255) ataataTCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTc < 2:4353633/91‑1 (MQ=255) ataataTCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTc < 2:29761/91‑1 (MQ=255) ataataTCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTc < 2:188442/91‑1 (MQ=255) taataTCGCTTTATGTTATTTCGCTTCTTATTTTTCCCTTACTTCAAAGAAAAAAACGACTACCATTCATTGGCAGTCG‑TTTTTTgtgttt < 2:5868899/91‑3 (MQ=255) taataTCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCt < 1:3250100/91‑1 (MQ=255) aataTCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCTATCATTGGCTGTCG‑TTTTTtgtgtgtg > 2:6840454/1‑91 (MQ=255) atCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGAt > 1:2619418/1‑91 (MQ=255) atCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGAt > 2:4721033/1‑91 (MQ=255) tCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGAtt > 1:2288895/1‑91 (MQ=255) cGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGAttt > 1:1590508/1‑91 (MQ=255) tttATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAAc < 2:5332246/91‑1 (MQ=255) ttATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAAcc < 2:2002716/91‑1 (MQ=255) tGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTCGATTTAACCATg > 2:4469835/1‑91 (MQ=255) gTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGa < 2:5720673/91‑1 (MQ=255) ttATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGaa < 2:2209968/91‑1 (MQ=255) tATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAAc < 2:5478784/91‑1 (MQ=255) aTTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACa > 2:4978345/1‑91 (MQ=255) aTTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACa > 1:3352544/1‑91 (MQ=255) aTTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACa < 1:6222332/91‑1 (MQ=255) cGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAata < 2:3456881/91‑1 (MQ=255) gCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAatat > 2:458849/1‑91 (MQ=255) ttcttATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGa > 2:2096426/1‑91 (MQ=255) ttcttATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGa < 2:6203418/91‑1 (MQ=255) cttATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAg < 1:719412/91‑1 (MQ=255) tagtttATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTa < 1:5692714/88‑1 (MQ=255) tATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTa > 1:4333932/1‑91 (MQ=255) tATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTa < 2:5163328/91‑1 (MQ=255) tATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTa < 2:6933907/91‑1 (MQ=255) tATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTa > 2:3372621/1‑91 (MQ=255) aTTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTAc < 2:4215425/91‑1 (MQ=255) ttttATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACa > 1:4229731/1‑91 (MQ=255) ttATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAga < 1:4124252/91‑1 (MQ=255) tATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaa > 2:6013751/1‑91 (MQ=255) tCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaatg > 2:2869911/1‑91 (MQ=255) tCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaatg > 1:4028893/1‑91 (MQ=255) cTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaatgaa < 1:5567676/91‑1 (MQ=255) cTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaatgaa > 1:3107585/1‑91 (MQ=255) cTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaatgaa < 1:3621692/91‑1 (MQ=255) cTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaatgaa < 1:4402603/91‑1 (MQ=255) ttACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaatgaat > 1:1005035/1‑91 (MQ=255) ttACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaatgaat < 1:2053529/91‑1 (MQ=255) tACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATa > 1:1205213/1‑91 (MQ=255) tACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATa > 1:6107910/1‑91 (MQ=255) tACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATa < 2:3231293/91‑1 (MQ=255) aCTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAg < 1:3036465/91‑1 (MQ=255) aCTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAg > 2:366735/1‑91 (MQ=255) aCTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAg < 1:1770624/91‑1 (MQ=255) cTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGt < 1:6000651/91‑1 (MQ=255) tCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTAc > 1:2752304/1‑91 (MQ=255) cAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTAcc < 1:2904583/91‑1 (MQ=255) cAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTAcc > 1:24052/1‑91 (MQ=255) aaaGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCa > 2:718151/1‑91 (MQ=255) aaGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCAt < 2:6603507/91‑1 (MQ=255) aaGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCAt > 2:1787570/1‑91 (MQ=255) aaGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCAt < 2:2480369/91‑1 (MQ=255) aGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCAtt > 2:1327978/1‑91 (MQ=255) aaaaaCGACTGCCAATGATTGGTAGTCGTTTTTTTGTGTCTGGATTTAACCATGAACAAATATTAAGTACAGAATGAATAGTACCATTAat > 2:3630507/1‑91 (MQ=25) aaaaCGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatac < 2:3750922/91‑1 (MQ=255) aaaaCGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatac < 1:6391252/91‑1 (MQ=255) aaaCGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAataca < 2:234450/91‑1 (MQ=255) aaCGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatacat > 2:4121357/1‑91 (MQ=255) aaCGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatacat < 2:3833002/91‑1 (MQ=255) aaCGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatacat > 1:486882/1‑91 (MQ=255) aaCGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatacat > 1:4944399/1‑91 (MQ=255) aaCGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatacat > 2:3138593/1‑91 (MQ=255) gACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAAtacataca > 1:2474635/1‑91 (MQ=255) aCTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATacatacat < 2:83012/91‑1 (MQ=255) ctgccAATGATTGGTAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACAtt > 1:1367519/4‑91 (MQ=39) tgccAATGATTGGTAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTa > 1:1071731/3‑91 (MQ=39) tACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTa < 1:802422/91‑1 (MQ=255) aCCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTAt < 1:2225876/91‑1 (MQ=255) ccAATGATTGGTAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATc > 1:4715231/1‑91 (MQ=255) aatgaTTGGTAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCgg > 1:1682428/5‑91 (MQ=255) aaTCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGATCAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCgg < 2:6983292/91‑1 (MQ=255) aTCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGa < 2:4666472/91‑1 (MQ=255) tgaTTGGTAGTCG‑TTTTTTGTGTCTGGAATTAAACATGAACAAATATGAAGTAAAGAATGAATAGTACCATTAATAAATACATTATCGGaa > 2:903641/3‑90 (MQ=255) tCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGAt > 2:2659098/1‑91 (MQ=255) cATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATg < 2:1570087/91‑1 (MQ=255) ttGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTa > 1:1450830/1‑91 (MQ=255) ggCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTAct > 2:4314360/1‑91 (MQ=255) ggCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTAct > 2:1083769/1‑91 (MQ=255) cAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTActtc > 2:5610611/1‑91 (MQ=255) cAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTActtc > 2:6311034/1‑91 (MQ=255) cAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTActtc > 1:3420720/1‑91 (MQ=255) cAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTActtc > 1:27875/1‑91 (MQ=255) | ATATTTAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTC > USA300TCH1516_ALE/2372329‑2372509 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |