| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 514979 = | NA (NA) | 90 (0.250) | 33/162 | 23.3 | NA | intergenic (+3047/‑3716) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 514999 = | NA (NA) | intergenic (+3067/‑3696) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 491 total aligned reads displayed.
ATTACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/515077‑514979‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttgttggGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTAGT > USA300TCH1516_ALE/514999‑515088 ATTACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCTTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAG > 2:6912070/1‑91ATTACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAG < 1:6485168/91‑1ATTACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAG > 2:2982466/1‑91ATTACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTCGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAG > 1:446323/1‑91 TTACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGC > 2:5385229/1‑91 TTACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGC > 1:2466706/1‑91 TTACCTTCTTGGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGC < 2:5782100/91‑1 TACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCGTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCT > 2:6817046/1‑91 TACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCT > 1:1098408/1‑91 TACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCT < 1:4151539/91‑1 TACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCT > 2:1667394/1‑91 TACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCT < 2:3238277/91‑1 TACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCT > 2:6163109/1‑91 ACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTT > 2:3785299/1‑91 ACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTT > 2:4452379/1‑91 ACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTT > 1:812828/1‑91 ACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTT > 2:6669543/1‑91 ACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTT < 1:5155261/91‑1 ACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTT < 2:771645/91‑1 ACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTT > 2:1078718/1‑91 ACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTT > 1:2193962/1‑91 ACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGGCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTT < 2:2429454/91‑1 CCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTG < 1:185413/91‑1 CCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTG < 1:2275897/91‑1 CTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTGCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGT > 2:4722088/1‑91 CTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGT > 1:2985070/1‑91 CTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGT < 1:6813623/91‑1 CTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGT < 1:2775808/91‑1 CTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGT < 2:1210417/91‑1 CTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGT < 2:1806768/91‑1 CTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGT < 1:4878997/91‑1 CTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGT > 2:2607745/1‑91 CTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGT > 2:319566/1‑91 CTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGT < 2:4291089/91‑1 CTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGT < 1:3206490/91‑1 CTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGT > 2:4904244/1‑91 CTTCTTTGATTCATCTTACCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGT > 1:5331613/1‑91 TCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGTTG > 2:3902525/1‑91 TCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGTTG < 1:2080308/91‑1 CTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGTTGG < 1:1789175/91‑1 GATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGTTGGGGTTGTAGGACACTCTATACG > 1:3444564/1‑91 TTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACAT > 1:5475376/1‑91 TTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTCGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATT > 1:3111450/1‑91 TAGAGTGTCCTACAACCCCAACAAGCAAGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCT > 1:1992328/1‑91 CCTACAACCCCAACAAGCAAGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGAT > 2:3621442/1‑91 ACCCCAACAAGCAAGCTTGTTGGGGTTGTAGGACACTCTCTACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCA > 2:2312442/1‑91 CCAACAAGCAAGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAG > 1:4291902/1‑91 AACAAGCAAGCTTGTTGGTGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAA > 1:6176910/1‑91 AGCAAGCTTGTTGGTGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTA > 2:2064288/1‑91 AGCAAGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTA > 2:6084779/1‑91 GCAAGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAA > 2:5706954/1‑91 GCAAGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAA > 1:135284/1‑91 CAAGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAAT > 2:6375509/1‑91 CAAGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAAT > 1:4564427/1‑91 CAAGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAAT > 1:103764/1‑91 AAGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATA > 2:1900651/1‑91 AAGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATA > 2:2468224/1‑91 AAGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATA > 1:4734997/1‑91 AAGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATA > 2:853625/1‑91 GCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAAT > 1:4365680/1‑91 GCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAAT > 1:3940995/1‑91 GCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAAT > 1:4520111/1‑91 GCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAAT > 2:4072924/1‑91 GCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAAT > 2:3101092/1‑91 CTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATC > 1:5011362/1‑91 CTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATC > 2:5013816/1‑91 CTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATC < 1:2993399/91‑1 CTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATC > 1:923911/1‑91 CTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATC > 1:1270280/1‑91 TTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCC > 1:2361534/1‑91 TTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCC < 1:3626021/91‑1 TTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCC < 1:152422/91‑1 TTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCC > 1:5631048/1‑91 TTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCC < 1:7021549/91‑1 TTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCC < 1:4050284/91‑1 TGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCT > 2:2106222/1‑91 TGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCT > 1:5759178/1‑91 GTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTG < 2:4612789/91‑1 TTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGT > 2:5494311/1‑91 TTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGT < 1:6222913/91‑1 TGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTA < 1:6406358/91‑1 TGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTA < 1:5979836/91‑1 TGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTA > 1:6674535/1‑91 TGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTA > 2:5613022/1‑91 TGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTA > 2:6469611/1‑91 TGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTA < 2:6242261/91‑1 TGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTA > 2:3963069/1‑91 TGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTA > 1:338083/1‑91 GGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTAG < 1:2571757/91‑1 GGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTAG < 2:1326800/91‑1 GGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTAG > 1:1652605/1‑91 GGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTAG > 2:1434204/1‑91 GGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTAG < 2:5842097/91‑1 GGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTAG > 2:2525125/1‑91 GGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTAG > 2:3325050/1‑91 GGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTAGT < 2:2783647/91‑1 GGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTAGT < 2:3046390/91‑1 GGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTAGT < 2:5201313/91‑1 GGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTAGT < 2:34695/91‑1 GGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTAGT > 1:3764465/1‑91 ATTACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCGTCCTTTGTAACTCCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/515077‑514979‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttgttggGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAATCCTGTAGT > USA300TCH1516_ALE/514999‑515088 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |