| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 515917 | NA (NA) | 86 (0.230) | 30/166 | 25.5 | NA | intergenic (+3985/‑2778) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 515920 | NA (NA) | intergenic (+3988/‑2775) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 496 total aligned reads displayed.
GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/515821‑515917‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgtccAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTT < USA300TCH1516_ALE/515920‑515831 GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAACATGTACCGGGGCTAACCATATTACCGCAGCTGTGGA > 2:3352652/1‑91GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTGAACATATTACCGAAGCTGTGGA < 2:5350885/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA > 1:5746492/1‑91GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA > 1:359309/1‑91GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 1:3668340/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA > 2:4983121/1‑91GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 2:4544190/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 1:4719612/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 2:4334892/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA > 1:5438529/1‑91GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 1:4635605/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 2:2511845/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA > 1:6297576/1‑91GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 1:6558215/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 1:67413/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA > 2:1783322/1‑91GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 2:15819/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA > 2:1244528/1‑91GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 2:1378450/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA > 1:3396277/1‑91GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA > 2:687768/1‑91GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 2:5743606/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 1:1313887/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 2:5492769/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA > 1:3031935/1‑91 CCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGAT < 2:4441566/91‑1 CCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGAT < 2:5299149/91‑1 CCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGAT < 2:6275554/91‑1 CCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGAT < 1:2248030/91‑1 CCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGAT < 2:3981701/91‑1 CCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGAT < 1:2352425/91‑1 CCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGAT < 1:5537107/91‑1 CATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATT < 2:2447305/91‑1 ATCATTTAAATAGTGCGGAAGAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAGCATATGACCGAAGCTGTGGATTG < 2:5563669/91‑1 ATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGCGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTG > 2:3135776/1‑91 ATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTG < 2:6399906/91‑1 ATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTG < 2:1436412/91‑1 ATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTG < 2:649022/91‑1 TCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGT < 2:5068999/91‑1 TCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGT > 1:6034220/1‑91 TCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGT > 1:212161/1‑91 TCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGT > 2:4116717/1‑91 TCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCCGGGCTAAACATATTACCGAAGCTGTGGATTGT > 1:6884515/1‑91 CATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTC > 2:2896261/1‑91 CATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTC > 1:825466/1‑91 ATTTAAAGAGTGCGTAATAGCTCACTAGTCGCGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCC > 2:5170281/1‑91 ATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCC > 1:3296991/1‑91 ATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCC > 2:2663652/1‑91 ATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCC < 1:5080157/91‑1 ATTTAAAGAGTGCGTAATAGCGCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCC < 1:1053978/91‑1 TTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAA < 1:1103569/91‑1 TTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAA < 2:7026529/91‑1 TTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAA < 2:131358/91‑1 TTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAA < 1:1391586/91‑1 TTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAA < 1:2653677/91‑1 TAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAA < 2:6958422/91‑1 AAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAG < 2:108204/91‑1 AAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAG < 2:934955/91‑1 AAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAG < 1:1222144/91‑1 AAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAG < 2:6634231/91‑1 AAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAG < 2:5389708/91‑1 AAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAG < 2:2113193/91‑1 AAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGG < 1:18339/91‑1 AAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGG < 1:5642990/91‑1 AGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGTCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGGA < 1:2461646/91‑1 GAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGGAC < 2:2266545/91‑1 gGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGGACA < 2:3768951/90‑1 GTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGGACAATCCA < 2:2763820/91‑1 GTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGGACAATCCA > 1:4181847/1‑91 TCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGGACAATCCACAGCTTCG < 2:4834647/91‑1 ACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGGACAATCCACAGCTTCGGT < 2:6066123/91‑1 TAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGGACAATCCACAGCTTCGGTAA < 1:6951470/91‑1 TAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGGACAATCCACAGCTTCGGTAA < 1:4854355/91‑1 ATTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCA > 2:4751638/1‑91 ATTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCA > 1:1622013/1‑91 ATTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCA > 1:3991299/1‑91 ATTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCA < 1:4925710/91‑1 ATTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCA < 2:3641036/91‑1 ATTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCA > 2:2986496/1‑91 ATTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCA > 1:6211928/1‑91 TTGTCCAAAGGATAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCAC < 2:4653842/91‑1 TTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCAC > 1:3214382/1‑91 TTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCAC < 1:3126604/91‑1 TTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCAC < 1:290367/91‑1 TTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCAC < 1:1914599/91‑1 TGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACT > 1:5214606/1‑91 GTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTC > 1:3789996/1‑91 GTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTC < 2:1898020/91‑1 TCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCT > 1:6133231/1‑91 TCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCT < 2:676771/91‑1 TCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCT < 2:2179983/91‑1 TCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCT < 1:4067949/91‑1 CCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGTGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTT < 1:5375919/91‑1 CCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTT < 2:5909800/91‑1 CCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTT > 1:6666111/1‑91 CCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTT < 2:4900046/91‑1 CCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTT > 1:4560960/1‑91 CCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTT > 1:6091996/1‑91 CAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTT < 2:597883/91‑1 CAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTT < 1:937447/91‑1 GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/515821‑515917‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgtccAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTT < USA300TCH1516_ALE/515920‑515831 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |