| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 517440 = | NA (NA) | 67 (0.180) | 27/166 | 27.2 | NA | intergenic (+5508/‑1255) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 517458 = | NA (NA) | intergenic (+5526/‑1237) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 441 total aligned reads displayed.
ATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/517536‑517440‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctatgTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGAT > USA300TCH1516_ALE/517458‑517547 ATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCCGCACTTATCCCGTCCACACATAGCTACCCA > 1:5403331/1‑91ATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCA > 2:481025/1‑91ATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCA < 2:4080630/91‑1 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG > 2:671491/1‑91 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG > 1:1951614/1‑91 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG > 2:610619/1‑91 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGATTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG < 1:6067436/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC > 2:2647473/1‑91 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:4087579/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:4163455/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:3380861/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 2:4403213/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 2:3732123/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 2:599685/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 2:2972733/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 2:2337967/91‑1 CTTATAACCGAAGGTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:2659620/91‑1 TTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCT > 2:3220631/1‑91 TTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCT < 2:4290778/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCTCTTATCCCGTCCACACATAGCTACCCAGCTA < 1:6859489/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 2:4586615/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA > 1:3761847/1‑91 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT > 2:3892161/1‑91 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT > 2:187969/1‑91 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT < 2:3068020/91‑1 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT < 1:4883993/91‑1 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT > 2:649453/1‑91 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT > 1:4589964/1‑91 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT > 2:4699187/1‑91 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT > 1:1368827/1‑91 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT < 1:2356896/91‑1 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT < 1:2511250/91‑1 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA > 2:1561199/1‑90 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTGAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT > 1:6187522/1‑91 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 2:230350/91‑1 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG > 1:3470296/1‑91 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 1:1489298/91‑1 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 1:2093868/91‑1 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 1:6556093/91‑1 TAACCGAAGTTGGGAAATCTCATCGTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG > 1:6789693/1‑91 GAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCCGCCCTTATCCCGTTCACACATAGCTACCCAGCTCTGTGTGCCCGGGCTA > 2:603565/1‑91 TTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG < 2:168484/51‑1 TGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTC > 1:5941997/1‑91 CAGCACTTATCCCGTCCACACATAGCTACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATG > 1:3441532/1‑91 ATAGCTACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTAT > 2:833434/1‑91 TACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGAT > 2:3679348/1‑91 TACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGAT > 1:6736371/1‑91 TACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTAGGTTATAAGAT > 2:7012562/1‑91 ACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATC > 1:5258394/1‑91 CCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCC > 1:160129/1‑91 CCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCC > 2:5652006/1‑91 CCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCC > 1:1173140/1‑91 CCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATCAAGCCCCCCTCAAGATGAGATTTCCCAACATCGGTTATAAGATCC > 2:6895192/1‑91 CAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCT > 1:31631/1‑91 AGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTC < 2:3645363/91‑1 AGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTC < 1:5530540/91‑1 AGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTC < 1:4411393/91‑1 AGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTC < 2:5089309/91‑1 GCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCA > 1:1867744/1‑91 GCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCA > 1:3586236/1‑91 GCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCA < 1:3612601/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 2:3994403/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 2:4996720/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 1:1344139/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 1:1761031/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 1:2825443/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 1:985602/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 1:5708798/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 1:5625644/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTCCCCAACTTCGGTTATAAGATCCCTCAA > 2:6311841/1‑91 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA > 2:2800861/1‑91 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA < 1:2721992/91‑1 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA > 2:6669585/1‑91 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA < 1:4718373/91‑1 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA > 2:5514067/1‑91 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA > 2:5162862/1‑91 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA < 2:2586798/91‑1 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCACTCAAA > 2:6420965/1‑91 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG < 2:5729556/91‑1 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG > 1:6931117/1‑91 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG > 1:1286110/1‑91 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG < 1:3004628/91‑1 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG < 1:2288366/91‑1 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG < 2:2105477/91‑1 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG < 2:1301939/91‑1 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG < 2:1113910/91‑1 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG > 1:3905874/1‑91 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG < 1:6505970/91‑1 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG < 1:4268941/91‑1 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG < 1:5911920/91‑1 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG < 1:5035759/91‑1 TGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGA < 1:1013941/91‑1 TGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGA < 1:2556986/91‑1 TGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGA > 2:4942910/1‑91 TGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGA > 2:5318018/1‑91 TGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGA < 2:889071/91‑1 TGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTCCCCAACTTCGGTTATAAGATCCCTCAAAGA < 1:6311841/91‑1 GTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGAT < 2:5478518/91‑1 GTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGAT > 2:2152133/1‑91 GTGTGGACGGGATAAGGGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGAT < 2:2492513/91‑1 ATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/517536‑517440‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctatgTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGAT > USA300TCH1516_ALE/517458‑517547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |