| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | CP000731 | 6,552 | +TCTCCAGGCACTTGTGCATATTCTGAAA | intergenic (+1069/‑419) | cadX → / → USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 6552 | 0 (0.000) | 915 (0.880) +TCTCCAGGCACTTGTGCATATTCTGAAA |
120/124 | 0.2 | 100% | intergenic (+1069/‑419) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| ? | CP000731 | 6553 = | 0 (0.000) | intergenic (+1070/‑418) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator | |||||
Only 100 of 1346 total aligned reads displayed.
TTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAA > CP000731/6462‑6642 | ttCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAatccac > 1:3521612/1‑91 (MQ=255) ttttaaattgaTAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACt > 2:4750096‑M1/5‑90 (MQ=255) aaaTTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctcc > 2:3784909‑M1/1‑86 (MQ=255) aaTTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctcca < 1:741051‑M1/91‑7 (MQ=255) aaTTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctcca < 2:5904139‑M1/91‑7 (MQ=255) tGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggc > 2:2245346‑M1/1‑82 (MQ=255) tGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggc > 1:5724726‑M1/1‑82 (MQ=255) tGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggc > 1:819391‑M1/1‑82 (MQ=255) gATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggca > 1:908459‑M1/1‑81 (MQ=255) aTAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcac > 1:2832953‑M1/1‑80 (MQ=255) aTAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcac > 1:6606074‑M1/1‑80 (MQ=255) tAATGCTGCCGTAAAACCGGCTGTGCCATATACGATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcact > 1:6970977‑M1/1‑79 (MQ=255) tAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcact > 1:996925‑M1/1‑79 (MQ=255) tAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcact < 2:1799518‑M1/91‑13 (MQ=255) aaTGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcactt > 2:5329172‑M1/1‑78 (MQ=255) aTGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttg < 2:3322778‑M1/91‑15 (MQ=255) aTGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttg < 2:6754581‑M1/91‑15 (MQ=255) ctgcCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgc < 2:4441023‑M1/91‑18 (MQ=255) gcCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcat < 1:3222742‑M1/91‑20 (MQ=255) ccGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcata < 1:5906527‑M1/91‑21 (MQ=255) cGTAAAACCGGCTGTGCCATATACCATGGACTCTTTAATGGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatat < 1:3966232‑M1/91‑22 (MQ=255) cGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatat > 1:1934267‑M1/1‑70 (MQ=255) gTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatatt < 2:2967367‑M1/91‑23 (MQ=255) gTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatatt > 1:5038523‑M1/1‑69 (MQ=255) gTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatatt > 1:2519943‑M1/1‑69 (MQ=255) gTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatatt > 1:5261023‑M1/1‑69 (MQ=255) tAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattc > 1:5627845‑M1/1‑68 (MQ=255) aaaCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctg > 1:4518357‑M1/1‑66 (MQ=255) ttacggcTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctga > 2:1633488‑M1/4‑65 (MQ=255) aCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaa < 2:2477222‑M1/91‑28 (MQ=255) aCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaa < 1:1601649‑M1/91‑28 (MQ=255) aCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaa > 2:4273432‑M1/1‑64 (MQ=255) cGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaa > 1:3349393‑M1/1‑62 (MQ=255) cGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaa > 1:2648922‑M1/1‑62 (MQ=255) cGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaa < 1:2349204‑M1/91‑30 (MQ=255) gCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatc > 2:2855805‑M1/1‑60 (MQ=255) gCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatc > 1:1024170‑M1/1‑60 (MQ=255) gCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatc > 1:5323201‑M1/1‑60 (MQ=255) gCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatc > 2:794323‑M1/1‑60 (MQ=255) gCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatc < 2:5214200‑M1/91‑32 (MQ=255) tgtgCCATATACCATAGACTCTTTGATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatcca < 2:5711877‑M1/91‑34 (MQ=255) tgtgCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatcca < 2:4803193‑M1/91‑34 (MQ=255) tgtgCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatcca > 1:2227716‑M1/1‑58 (MQ=255) atatACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgta > 1:6756614‑M1/1‑52 (MQ=255) tataCCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtat > 2:4685282‑M1/1‑51 (MQ=255) taCCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgt < 2:5468102‑M1/91‑43 (MQ=255) aCCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtg < 2:2132761‑M1/91‑44 (MQ=255) aCCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtg < 2:2368712‑M1/91‑44 (MQ=255) aTAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtca > 2:318745‑M1/1‑45 (MQ=255) aTAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtca > 1:4429983‑M1/1‑45 (MQ=255) aTAGACTCTTTAATAGACATTTCTTGGGGAAAAGGAACAATCCACtctccaggcactcgtgcatattctgaaaatccaccagtatgtgtca > 1:6413348‑M1/1‑45 (MQ=255) aGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacg > 2:4093096‑M1/1‑43 (MQ=255) gACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgc > 1:4194551‑M1/1‑42 (MQ=255) ctctTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgcca < 1:5485773‑M1/91‑52 (MQ=255) ctctTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgcca > 2:1963649‑M1/1‑40 (MQ=255) tctTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaa > 2:6660372‑M1/1‑39 (MQ=255) ctTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaac > 2:1149673‑M1/1‑38 (MQ=255) tttAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaaca > 2:3110270‑M1/1‑37 (MQ=255) tttAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaaca > 1:3836802‑M1/1‑37 (MQ=255) tttAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaaca < 1:6024006‑M1/91‑55 (MQ=255) tttAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaaca > 2:1547046‑M1/1‑37 (MQ=255) tAATATACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatc < 2:921129‑M1/91‑57 (MQ=255) tAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatc < 2:1306517‑M1/91‑57 (MQ=255) tAATAGACATTTCTTGGGGAATAGGAACAATACACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatc > 1:6852889‑M1/1‑35 (MQ=255) aaTAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatca < 1:6545172‑M1/91‑58 (MQ=255) tAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcata < 1:4925376‑M1/91‑60 (MQ=255) aGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataa < 2:2588043‑M1/91‑61 (MQ=255) gACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataac > 2:702067‑M1/1‑30 (MQ=255) cATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataacca > 1:6133365‑M1/1‑28 (MQ=255) aTTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccag < 2:455835‑M1/91‑65 (MQ=255) aTTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccag > 2:6019898‑M1/1‑27 (MQ=255) tttCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagt < 1:36330‑M1/91‑66 (MQ=255) tCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaa > 1:373778‑M1/1‑24 (MQ=255) ttGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaact < 2:3660358‑M1/91‑70 (MQ=255) ttGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaact > 1:4615004‑M1/1‑22 (MQ=255) tGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaacta > 1:5129528‑M1/1‑21 (MQ=255) ggAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaata < 1:407168‑M1/91‑74 (MQ=255) ggAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaata < 2:685332‑M1/91‑74 (MQ=255) aGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacatta < 1:2030647‑M1/91‑79 (MQ=255) aGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacatta > 1:2117797‑M1/1‑13 (MQ=255) ggAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattgt < 1:429317‑M1/91‑80 (MQ=255) ggAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattat < 2:3516602‑M1/91‑80 (MQ=255) aCAATCGACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgc < 2:6433147‑M1/91‑83 (MQ=255) aCAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgc > 2:5113479‑M1/1‑9 (MQ=255) cAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgcc < 1:4797671‑M1/91‑84 (MQ=255) cAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgcc < 2:5019829‑M1/91‑84 (MQ=255) cAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgcc > 2:38819‑M1/1‑8 (MQ=255) cAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgcc > 1:2923548‑M1/1‑8 (MQ=255) aaTCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgcct > 2:1414797‑M1/1‑7 (MQ=255) aaTCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgcct > 2:2027718‑M1/1‑7 (MQ=255) aTCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcatgccaacatcataaccagtaactaatacattatcgcctt > 1:5819985‑M1/1‑6 (MQ=255) aTCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaaaatcataaccagtaactaatacattatcgcctt > 1:1846444‑M1/1‑6 (MQ=255) tCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttc > 1:1722285‑M1/1‑5 (MQ=255) ccACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttct < 1:3090912‑M1/91‑88 (MQ=255) cACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctt < 2:6107737‑M1/91‑89 (MQ=255) aCtctccaggcacttgtgcatattctgaaactccacctgtatgtgtcacgccaacatcataaccagtaactaatacattaacgccttctgt > 2:5580699‑M1/1‑2 (MQ=255) aCtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttcttt > 1:6276800‑M1/1‑2 (MQ=255) aCtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttcttt > 1:12818‑M1/1‑2 (MQ=255) aCtccccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttcttt > 1:1416739‑M1/1‑2 (MQ=255) ctctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttcttta > 2:633524‑M1/1‑1 (MQ=255) | TTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAA > CP000731/6462‑6642 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |