| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | USA300TCH1516_ALE | 848,638 | C→T | intergenic (+643/‑237) | trxB → / → USA300HOU_RS04145 | Thioredoxin reductase/Nucleotide‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 848,638 | 0 | C | T | 99.5% | 1380.1 / ‑2.6 | 369 | intergenic (+643/‑237) | trxB/USA300HOU_RS04145 | Thioredoxin reductase/Nucleotide‑binding protein |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base T (179/187); total (179/190) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.31e-01 | |||||||||||
Only 100 of 371 total aligned reads displayed.
AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATT > USA300TCH1516_ALE/848548‑848724 | aaTTTCTTTTCGAAATTCTCTGTGTTGGGGCGTACACCCCAACTCGCATTACCTTTTGATTATCTTTACGAAACTCTTTGTGTTGGGGccc > 2:10383/1‑91 (MQ=17) ttCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCTCAACTCGCATTGCCTGTATAGTTTCTTTTCGTACTTCCCTGTCATGGGGCctctt > 2:4499267/1‑90 (MQ=17) tCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGa > 1:1870534/1‑91 (MQ=255) tCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTaga < 1:5522850/91‑1 (MQ=255) aaaTTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGtt > 1:6887264/1‑91 (MQ=255) aaTTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGCATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGttt > 2:6778347/1‑90 (MQ=255) aTTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGa < 1:2814612/91‑1 (MQ=255) aTTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGa < 2:2674637/91‑1 (MQ=255) ctctGTGTTGGGGCCCACACCCCACCTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGaaaa < 1:3848925/91‑1 (MQ=255) ctctGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGaaaa < 2:3844101/91‑1 (MQ=255) ctctGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGaaaa < 2:1866433/91‑1 (MQ=255) tctGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGaaaaa > 2:5498190/1‑91 (MQ=255) tctGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGaaaaa < 1:3141858/91‑1 (MQ=255) ctGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGaaaaaa > 1:2070317/1‑91 (MQ=255) tgtgTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAg > 2:2278058/1‑91 (MQ=255) gtgtTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGc > 1:1408113/1‑91 (MQ=255) gtgtTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGc < 1:6345876/91‑1 (MQ=255) tgtTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCt > 2:413154/1‑91 (MQ=255) tGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCttgt < 2:6027200/91‑1 (MQ=255) ggggCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCttgtt > 1:4469219/1‑91 (MQ=255) ggggCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCttgtt > 2:1699047/1‑91 (MQ=255) ggCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGc > 1:1030054/1‑91 (MQ=255) ggCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTATCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGc < 1:5813996/91‑1 (MQ=255) gCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCa > 1:2538581/1‑91 (MQ=255) gCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCa < 2:5375141/91‑1 (MQ=255) cccACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCaa < 1:6611223/91‑1 (MQ=255) cccACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCaa > 1:5924837/1‑91 (MQ=255) ccccacCCCACCTCGCTTTGCCTGTAGATTTTCTTTTCGAATTTCTCTGGGTTGGGCCCTCTGCCTAGAGTTAAAAAAAGCTTGTTGCAAg < 2:5064357/88‑1 (MQ=17) ccACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAg < 1:5270663/91‑1 (MQ=255) ccACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAg > 1:1376310/1‑91 (MQ=255) ccACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAg < 1:3071446/91‑1 (MQ=255) cacaCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAgc < 1:1645541/91‑1 (MQ=38) acacCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAgcg > 2:5207683/1‑91 (MQ=37) acacCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAgcg > 2:4291957/1‑91 (MQ=255) acacCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAgcg > 2:2432174/1‑91 (MQ=255) acacCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAgcg < 1:4235030/91‑1 (MQ=255) acacCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAgcg > 2:566595/1‑91 (MQ=255) acacCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAgcg > 1:4059890/1‑91 (MQ=255) cacCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAgcgc < 1:4534845/91‑1 (MQ=255) acCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCa > 2:205785/1‑91 (MQ=255) cccAACTCGCATTTCCTGTACAATTTCTTTTCGAAATTCCCTGTGTTGGGGCCTCTGCCTAGAGTTGAAAAAAGCTTGTTGCAAGCGCAtt > 2:3713782/1‑91 (MQ=11) ccAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCAttt < 2:1486122/91‑1 (MQ=255) ccAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCAttt > 1:4974110/1‑91 (MQ=255) ccAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCAttt > 1:2396912/1‑91 (MQ=255) ccAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATGCTCTGTGTTGGGGCCTCTGACTAGAGGTGGAAAAAGCTTGTTGCAAGCGCAttt < 1:2969087/91‑1 (MQ=11) cAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGCCTAGAGTTGAAAAAAGCTTGTTGCAAGCGCAtttt > 2:5833199/1‑91 (MQ=255) aCTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTttca < 1:4575396/91‑1 (MQ=255) cTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTttcat < 1:5991973/91‑1 (MQ=255) cGCATTGTCTGTAGAATTTCTCTTCGAAATTCTCTGTGTTGGGGCCTCTTACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTttcattc < 2:467225/91‑1 (MQ=14) cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAg > 2:2096730/1‑91 (MQ=255) cATGGCCTGTAGAATTTCGTTTCGAAATTCTCTGTGTTGGGGCCTCTGAATAAAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAg < 2:735109/91‑1 (MQ=14) aTTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGt > 2:4015648/1‑91 (MQ=255) aTTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGt < 1:1725594/91‑1 (MQ=255) aTTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGt < 2:1928565/91‑1 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTc < 2:4741543/91‑1 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTc < 2:1096722/91‑1 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTc > 1:3598230/1‑91 (MQ=255) gCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCaa < 1:991839/91‑1 (MQ=255) ccTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAac < 2:4881667/91‑1 (MQ=255) cTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAact > 1:772554/1‑91 (MQ=255) gTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAactac > 2:2577581/1‑91 (MQ=255) gTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAactac > 2:3391020/1‑91 (MQ=255) tAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAactact < 2:3502611/91‑1 (MQ=255) aaTTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGc < 2:5263350/91‑1 (MQ=255) aTTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCa < 2:6421737/91‑1 (MQ=255) aTTTCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCa < 2:3212343/91‑1 (MQ=255) ttCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaat < 2:6953578/91‑1 (MQ=255) ttCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaat > 2:3087217/1‑91 (MQ=255) tCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGTTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaata > 2:2824876/1‑91 (MQ=255) tCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaata < 1:1073683/91‑1 (MQ=255) tCTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaata > 2:2758736/1‑91 (MQ=255) cTTTTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaatat < 1:5610538/91‑1 (MQ=255) ttttCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaatata > 1:122809/1‑91 (MQ=255) ttttCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaatata > 2:662957/1‑91 (MQ=255) tCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaatataata < 2:955733/91‑1 (MQ=255) tCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaatataata > 2:1789685/1‑91 (MQ=255) gAAATTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAAtatt > 1:2345689/1‑91 (MQ=255) aaaTTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAAtatta < 1:4084313/91‑1 (MQ=255) aaTTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAAtattat < 2:5927136/91‑1 (MQ=255) aaTTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAAtattat < 1:1554778/91‑1 (MQ=255) aTTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATtata < 2:248521/91‑1 (MQ=255) aTTCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATtata > 1:675281/1‑91 (MQ=255) ttCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAg < 1:6265505/91‑1 (MQ=255) ttCTCTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAg > 2:6348560/1‑91 (MQ=255) tctcTGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGa > 2:6183448/1‑91 (MQ=255) tctGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGAcc < 1:5053434/91‑1 (MQ=255) ctGTGTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGAccc > 2:1274744/1‑91 (MQ=255) tgtgTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCt > 1:4729814/1‑91 (MQ=255) tgtgTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCt > 2:3800566/1‑91 (MQ=255) tgtgTTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCt > 1:3371851/1‑91 (MQ=255) gtgtTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTa < 1:741537/91‑1 (MQ=255) tgtTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAg < 2:2875921/91‑1 (MQ=255) gtTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAgg < 1:2504231/91‑1 (MQ=255) gtTGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAgg < 1:3511859/91‑1 (MQ=255) ttGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGa < 2:5860654/91‑1 (MQ=255) ttGGGGCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGa > 1:226319/1‑91 (MQ=255) ggggCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACa > 1:2253534/1‑91 (MQ=255) ggggCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACa < 1:4314490/91‑1 (MQ=255) ggggCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACa < 1:4394620/91‑1 (MQ=255) ggCCTCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACAtt < 1:958437/91‑1 (MQ=255) | AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATT > USA300TCH1516_ALE/848548‑848724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |