New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 517080	NA (NA)	5 (0.040)	5/250	NT	NA	intergenic (+5148/‑1615)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase
	?	USA300TCH1516_ALE	= 517096	NA (NA)					intergenic (+5164/‑1599)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase

CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/516937‑517080 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACACT  <  USA300TCH1516_ALE/517096‑516957                                                                                                                                                                                                                                                                                               CACTTATCGTGGTGGGAGACAGTGTCAGGCTGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC                                                                                                                                                  >  1:525562/1‑141 CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGTCGCTCAAAGGTTCCCTCAGAATGGTTGGAAAGCATTCATAGGGTGTAAAGGCATAAGGGAGCTTGAC                                                                                                                                                  <  2:472521/141‑1 CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC                                                                                                                                                  >  1:1046781/1‑141 CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC                                                                                                                                                  <  4:415393/141‑1 CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC                                                                                                                                                  >  4:195837/1‑141 CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC                                                                                                                                                  >  4:195794/1‑141 CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC                                                                                                                                                  <  3:83726/141‑1 CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC                                                                                                                                                  <  3:251554/141‑1 CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC                                                                                                                                                  >  3:125014/1‑141 CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC                                                                                                                                                  <  2:627266/141‑1 CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC                                                                                                                                                  <  1:1045325/141‑1 CACTTATCGTGGAGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGGGCTCAAAGGTTCCCTCAGCATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC                                                                                                                                                  >  1:733281/1‑141  acgataaGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACT                                                                                                                                                 >  3:300633/8‑141  ACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCGGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACT                                                                                                                                                 <  1:164172/141‑1  ACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACT                                                                                                                                                 >  1:161005/1‑141  ACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACT                                                                                                                                                 >  3:163286/1‑141  ACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACT                                                                                                                                                 >  2:382929/1‑141  ACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCGCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACT                                                                                                                                                 >  2:860988/1‑141  ACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGAGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACT                                                                                                                                                 >  3:373572/1‑141   cgataaGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTG                                                                                                                                                >  4:44571/7‑141   cgataaGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTG                                                                                                                                                >  3:351927/7‑141   cgTATCGTGGTGGGAGACAGTGACAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGCGTGTAAAGGCATAAGGGAGCTTGACTG                                                                                                                                                <  4:35554/139‑1   caTATCGTGGGGGGAGCCAGTGTCAGGGGGGCAGTTGGACTGGGGCGGTCGCCTCCTAGAAGGTAACGGGGGCGCCCGAAGGTTCCCTCAGCAAGGATGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACgg                                                                                                                                                >  4:348289/3‑139   CTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTG                                                                                                                                                >  1:411523/1‑141   CTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTG                                                                                                                                                <  4:350078/141‑1   CTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTG                                                                                                                                                >  2:294552/1‑141    TTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGCCCGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCCAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGg                                                                                                                                               >  2:541578/1‑140    TTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAGTCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGC                                                                                                                                               >  2:965804/1‑141    TTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGC                                                                                                                                               >  1:889064/1‑141    TTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGC                                                                                                                                               >  1:689264/1‑141    TTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGC                                                                                                                                               >  2:353058/1‑141    TTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGC                                                                                                                                               <  1:668554/141‑1    TTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGC                                                                                                                                               <  1:5053/141‑1    TTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGC                                                                                                                                               >  1:144388/1‑141    TTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGC                                                                                                                                               >  1:205834/1‑141    TTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGCTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGC                                                                                                                                               >  2:536689/1‑141    TTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGATGGAAATCCTTCAAAGAGCGCAACGGCATAAGGGAGCTTGACTGg                                                                                                                                               >  1:762681/1‑140                   ACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCTCGACTTGTAGGTCT                                                                                                                                <  2:696604/141‑1                              CGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCTCGACTTGTAGGTCTCGCAGTCAAGC                                                                                                                     >  4:111746/1‑141                                                          CTACAAGGGAACGGAGGCGCTAAAAGGTTGCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAACTTCACTGCTCGACTTGTAGGTCTCGCAGTCAAGCCCACTTATGCCTTAACACTCTATGAATG                                                                                         <  4:320680/141‑1                                                                                                   TTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTA                                                >  1:136111/1‑141                                                                                                                          AAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCA                        >  3:111746/1‑141                                                                                                                                             CTGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGAC     <  1:91348/141‑1                                                                                                                                             CTGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGAC     >  1:433275/1‑141                                                                                                                                             CTGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGAC     >  1:426956/1‑141                                                                                                                                             CTGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGAC     <  1:261071/141‑1                                                                                                                                             CTGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGAC     <  1:7344/141‑1                                                                                                                                             CTGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGAC     <  2:916870/141‑1                                                                                                                                             CTGCTCGACTTGTAGGTCTCGCAGTCAAGCGCCCTTATGCCGTTACTCTCTATTAATGATTTCCAACCGTTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGAC     <  1:644470/141‑1                                                                                                                                             CTGCCCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGAC     <  2:310911/141‑1                                                                                                                                              TGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACTCTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACA    <  1:15490/141‑1                                                                                                                                              TGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTGTGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACA    <  2:930807/141‑1                                                                                                                                              TGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTGCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGAac    >  4:434877/1‑139                                                                                                                                              TGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGAC     <  1:397793/141‑1                                                                                                                                              TGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACA    >  2:712555/1‑141                                                                                                                                              TGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACA    <  1:273319/141‑1                                                                                                                                              TGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACA    >  3:123787/1‑141                                                                                                                                              TGCGCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACA    <  2:527121/141‑1                                                                                                                                               GCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACAC   <  3:352865/141‑1                                                                                                                                               GCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACAC   >  1:669932/1‑141                                                                                                                                               GCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACAC   >  3:143258/1‑141                                                                                                                                               GCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACAC   <  1:769491/141‑1                                                                                                                                               GCTCGACGTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACAC   <  2:401240/141‑1                                                                                                                                                CTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACACT  <  3:312490/141‑1                                                                                                                                                CTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACACT  <  1:607892/141‑1                                                                                                                                                CTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACACT  >  1:655088/1‑141                                                                                                                                                CTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACACT  <  4:181858/141‑1                                                                                                                                                                                                                                                                                               CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/516937‑517080 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACC‑TTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACACT  <  USA300TCH1516_ALE/517096‑516957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.