| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 932471 | 121 (0.970) | 7 (0.060) | 7/234 | NT | 5.7% | intergenic (+17/+246) | USA300HOU_RS04635/nfuA | hypothetical protein/Fe/S biogenesis protein NfuA |
| ? | USA300TCH1516_ALE | = 932493 | 120 (1.060) | intergenic (+39/+224) | USA300HOU_RS04635/nfuA | hypothetical protein/Fe/S biogenesis protein NfuA | |||||
GATAAAGAATATGAAAAATATGTTATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAGCACATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/932320‑932471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatagcacataCGCTCAATCAAAATCGTTGAGTTATGTGCTATTTGTATTTTAATTTTTAGGTTTATCTACTTCAGGTTGTGGTTCACCTTTCATATGTTTCGCAATTTGCTCATCCATATAAACCCAACCTTTCCAACCGATGTGTAC < USA300TCH1516_ALE/932493‑932356 GATAAAGAATATGAAAAATATGTTATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACA > 1:1005596/1‑141 ATAAAGAATATGAAAAATATGTTATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAA > 1:50192/1‑141 AGAATATGAAAAATATGTTATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAG > 1:391765/1‑141 AGAATATGAAAAATATGTTATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAG > 1:440493/1‑141 AGAATATGAAAAATATGTTATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAG > 1:441512/1‑141 AGAATATGAAAAATATGTTATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAG > 1:699088/1‑141 AGAATATGAAAAATATGTTATCAGTGATGCAGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAG > 1:441498/1‑141 ATATGAAAAATATGTTATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAGCAC > 4:217526/1‑141 ATATGAAAAATATGTTATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAGCAC < 2:420357/141‑1 TATGAAAAATATGTTATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAGCACA < 4:3502/141‑1 ATGAAAAATATGTTATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAGCACAT > 2:734088/1‑141 AGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAGCACATACGCTCAATCAAAATCG < 2:944640/141‑1 CCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGCACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAGCACATACGCTCAATCAAAATCGTTGAGTT < 2:791290/141‑1 CATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAGCACATACGCTCAATCAAAATCGTTGAGTTATGTGCT < 1:637306/141‑1 GGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAGCACATACGCCCAATCAAAATCGTTGAGTTATGTGCTATTT < 1:113321/141‑1 TTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAGCACATACGCTCAATCAAAATCGTTGAGTTATGTGCTATTTGT < 2:259212/141‑1 AGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAGCACATACGCTCAATCAAAATCGTTGAGTTATGTGCTATTTGTATTTTA < 2:913854/141‑1 TGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATATAAAAATAGCACATACGCTCAATCAAAATCGTTGAGTTATGTGCTATTTGTATTTTAAT < 2:362448/141‑1 AAATAGCACATACGCTCAATCAAAATCGTTGAGTTATGTGCTATTTGTATTTTAATTTTTAGGTTTATCTACTTCAGGTTGTGGTTCACCTTTCATATGTTTCGCAATTTGCTCATCCATATAAACCCAACCTTTCCAACC > 2:341117/1‑141 AATAGCACATACGCTCAATCAAAATCGTTGAGTTATGTGCTATTTGTATTTTAATTTTTAGGTTTATCTACTTCAGGTTGTGGTTCACCTTTCATATGTTTCGCAATTTGCTCATCCATATAAACCCAACCTTTCCAACCG < 2:892550/141‑1 GCACATACGCTCAATCAAAATCGTTGAGTTATGTGCTATTTGTATTTTAATTTTTAGGTTTATCTACTTCAGGTTGTGGTTCACCTTTCATATGTTTCGCAATTTGTTCATCCATATAAACCCAACCTTTCCAACCGATGT > 4:372830/1‑141 GCACATACGCTCAATCAAAATCGTTGAGTTATGTGCTATTTGTATTTTAATTTTTAGGTTTATCTACTTCAGGTTGTGGTTCACCTTTCATATGTTTCGCAATTTGCTCATCCATATAAACCCAACCTTTCCAACCGATGT > 1:405575/1‑141 GCACATACGCTCAATCAAAATCGTTGAGTTATGTGCAATTTGTATTTTAATTTTTAGGTTTATCTACTTCAGGTTGTGGTTCACCTTTCATATGTTTCGCAATTTGCTCATCCATATAAACCCAACCTTTCCAACCGATGT < 2:134974/141‑1 CACATACGCTCAATCAAAATCGTTGAGTTATGTGCTATTTGTATTTTAATTTTTAGGTTTATCTACTTCAGGTTGTGGTTCACCTTTCATACGTTTCGCAATTTGCTCATCCATATAAACCCAACCTTTCCAACCGATGTG > 2:938205/1‑141 CATACGCTCAATCAAAATCGTTGAGTTATGTGCTATTTGTATTTTAATTTTTAGGTTTATCTACTTCAGGTTGTGGTTCACCTTTCATATGTTTCGCAATTTGCTCATCCATATAAACCCAACCTTTCCAACCGATGTGTA > 2:921534/1‑141 CATACGCTCAATCAAAATCGTTGAGTTATGTGCTATTTGTATTTTAATTTTTAGGTTTATCTACTTCAGGTTGTGGTTCACCTTTCATATGTTTCGCAATTTGCTCATCCATATAAACCCAACCTTTCCAACCGATGTGTA < 3:27000/141‑1 CATACGCTCAATCAAAATCGTTGAGTTATGTGCTATTTGTATTTTAATTTTTAGGTTTATCTACTTCAGGTTGTGGTTCACCTTTCATATGTTTCGCAATTTGCTCATCCATATAAACCCAACCTTTCCAACCGATGTGTA < 4:426622/141‑1 ATACGCTCAATCAAAATCGTTGAGTTATGTGCTATTTGTATTTTAATTTTTAGGTTTATCTACTTCAGGTTGTGGTTCACCTTTCATATGTTTCGCAATTTGCTCATCCATATAAACTCAACCTTTCCAACCGATGTGTAC > 4:228658/1‑141 ATACGCTCAATCAAAATCGTTGAGTTATGTGCTATTTGTATTTTAATTTTTAGGTTTATCTACTTCAGGTTGTGGTTCACCTTTCATATGTTTCGCAATTTGCTCATCCATATAAACCCAACCTTTCCAACCGATGTGTAC > 1:306664/1‑141 GATAAAGAATATGAAAAATATGTTATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAA‑‑ATACAAATAGCACATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/932320‑932471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatagcacataCGCTCAATCAAAATCGTTGAGTTATGTGCTATTTGTATTTTAATTTTTAGGTTTATCTACTTCAGGTTGTGGTTCACCTTTCATATGTTTCGCAATTTGCTCATCCATATAAACCCAACCTTTCCAACCGATGTGTAC < USA300TCH1516_ALE/932493‑932356 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |