| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2494792 | 140 (1.120) | 4 (0.040) | 3/236 | NT | 3.0% | intergenic (‑155/+52) | USA300HOU_RS12845/mnmC_2 | hypothetical protein/tRNA 5‑methylaminomethyl‑2‑thiouridine biosynthesis bifunctional protein MnmC |
| ? | USA300TCH1516_ALE | = 2494816 | 128 (1.120) | intergenic (‑179/+28) | USA300HOU_RS12845/mnmC_2 | hypothetical protein/tRNA 5‑methylaminomethyl‑2‑thiouridine biosynthesis bifunctional protein MnmC | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATCCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2494642‑2494792‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatagctatacAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATGTGCTAAACCAAATTCAGTTGTGTCATATCTTCGCTTTTTTGTCACTGTTATAATAGG < USA300TCH1516_ALE/2494816‑2494677 AATCCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAA > 3:396602/1‑141 ATCCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTCTGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAA > 2:532404/1‑141 ATCCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTGAAATAACTTTACATCAAGCGCTATACAAATAAAA > 4:348481/1‑141 ATCCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAA > 1:781684/1‑141 ATCCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAA > 3:130630/1‑141 CCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATA > 1:84380/1‑141 CCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATA > 1:881640/1‑141 TCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGC < 2:977192/141‑1 CTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTAT > 2:501499/1‑141 TCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATA > 1:511519/1‑141 ACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTAT < 2:255489/141‑1 AGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTT < 2:510568/141‑1 AGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTT < 3:173740/141‑1 TAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCAT < 3:28007/141‑1 AATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATGTGCTAAACCAAATTCAGTTGTGTCATATCTTCGCTTTTTTGTCACTG > 2:809118/1‑141 TAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATGTGCTAAACCAAATTCAGTTGTGTCATATCTTCGCTTTTTTGTCACTGTT > 4:2435/1‑141 CTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATGTGCTAAACCAAATTCAGTTGTGTCATATCTTCGCTTTTTTGTCACTGTTATA > 2:561051/1‑141 CTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATGTGCTAAACCAAATTCAGTTGTGTCATATCTTCGCTTTTTTGTCACTGTTATA > 2:560975/1‑141 TACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATGTGCTAAACCAAATTCAGTTGTGTCATATCTTCGCTTTTTTTTCACTGTTATAATA > 4:228865/1‑141 TACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATGTGCTAAACCAAATTCAGTTGTGTCATATCTTCGCTTTTTTGTCACTGTTATAATA < 1:384859/141‑1 CAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATGTGCTAAACCAAATTCAGTTGTGTCATATCTTCGCTTTTTTGTCACTGTTATAATAGG < 2:695045/141‑1 AATCCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2494642‑2494792‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatagctatacAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTTTATTTGTATAGCGCTTGATGTAAAGTTATTTTAGCTGTCATACTATGTGCTAAACCAAATTCAGTTGTGTCATATCTTCGCTTTTTTGTCACTGTTATAATAGG < USA300TCH1516_ALE/2494816‑2494677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |