| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2636366 | 100 (0.800) | 4 (0.040) | 4/236 | NT | 3.9% | intergenic (‑419/+50) | fnbA_2/gntT | Fibronectin‑binding protein A/High‑affinity gluconate transporter |
| ? | USA300TCH1516_ALE | = 2636392 | 107 (0.940) | intergenic (‑445/+24) | fnbA_2/gntT | Fibronectin‑binding protein A/High‑affinity gluconate transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACTAAACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2636218‑2636366‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaacgtgtttTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTGTG < USA300TCH1516_ALE/2636392‑2636253 ACTAAACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAA < 2:758470/141‑1 CTAAACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAA > 1:444240/1‑141 AAACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACG < 4:118398/141‑1 AAACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACG < 1:992520/141‑1 AACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGT > 1:297608/1‑141 AACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGT < 1:825878/141‑1 AACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGT < 2:54942/141‑1 AACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTCTTGATATAGTTCTGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGT > 4:245137/1‑141 ACGTTTCATAATTATCGCCTGTACAATACACACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGAATAAAAATAAACGTG < 2:257284/141‑1 CGTTTCATAATTAACGCCTGTACAATACGCCCAAACACATTTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGT < 1:14484/141‑1 TTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTT < 1:247137/141‑1 AACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACG < 2:187891/141‑1 ATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTT < 4:4028/141‑1 TGTCTTGAAACGCCTTTCATCACTCTAACATCCCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTA < 2:1084095/141‑1 AAATCCCCAATATACTTTTTATATCGTTCGGATTCTGACTATTTCAGACGATTTTCTGCATAAAAATA > 1:915915/1‑68 AAATCCCCAATATACTTTTTATATCGTTCGGATTCTGACTATTTCAGACGATTTTCTGCATAAAAATA < 2:915915/68‑1 ttaTGCAGAAAAATAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAG < 1:50938/138‑1 TAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACA < 3:246134/141‑1 AAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACAT < 4:298994/141‑1 AACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATG < 2:6068/141‑1 GTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTT < 2:83458/141‑1 TGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTT < 1:441353/141‑1 TGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTT < 1:133998/141‑1 GTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTT > 2:424759/1‑141 GTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTT > 3:336600/1‑141 TTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTTATGAAAGGCGTTTCAAGACATGTTTTTt > 2:1043033/1‑140 TTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTG < 2:564392/141‑1 TTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTG > 2:181214/1‑141 TTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTG < 2:564317/141‑1 TTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTGT < 2:611945/141‑1 TTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTGT > 4:295305/1‑141 TTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTGTG < 2:904960/141‑1 TTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTGTG < 1:42397/141‑1 ACTAAACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2636218‑2636366‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaacgtgtttTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTGTG < USA300TCH1516_ALE/2636392‑2636253 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |