| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 355,854 | G→T | 5.8% | I282I (ATC→ATA) | brnQ_2 ← | Branched‑chain amino acid transport system 2 carrier protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 355,854 | 0 | G | T | 5.8% | 459.9 / 10.3 | 137 | I282I (ATC→ATA) | brnQ_2 | Branched‑chain amino acid transport system 2 carrier protein |
| Reads supporting (aligned to +/- strand): ref base G (60/68); new base T (2/7); total (62/75) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 138 total aligned reads displayed.
TCTAAACCAAGTGTTGTAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCAT > USA300TCH1516_ALE/355714‑355991 | tAAACCAAGTGTTGTAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGAt < 2:825038/141‑1 (MQ=255) tAAACCAAGTGTTGTAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGAt > 1:693888/1‑141 (MQ=255) tAAACCAAGTGTTGTAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGAt > 4:286768/1‑141 (MQ=255) tAAACCAAGTGTTGTAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGAt < 3:146503/141‑1 (MQ=255) aCCAAGTGTCGTAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAAc > 1:954961/1‑141 (MQ=255) cAAGTGTTGTAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCg < 1:679196/141‑1 (MQ=255) cAAGTGTTGTAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCg > 4:176551/1‑141 (MQ=255) aaGTGTTGTAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGt < 3:312433/141‑1 (MQ=255) aaGTGTTGTAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGt < 1:417820/141‑1 (MQ=255) aaGTATTGTAAATAAGTACCGTATGAGAGAGAAAATGAGTGCGCATATTTAATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGt < 1:391399/141‑1 (MQ=255) aGTGTTGTAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTc > 3:296956/1‑141 (MQ=255) gtgtTGTAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCa > 3:57259/1‑141 (MQ=255) gtgtTGTAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCa > 1:489242/1‑141 (MQ=255) tgttgtAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCAt > 1:516104/1‑141 (MQ=255) gttgtAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCAtt < 1:560922/141‑1 (MQ=255) gttgtAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCAtt < 3:116401/141‑1 (MQ=255) gttgtAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCAtt < 4:24696/141‑1 (MQ=255) tgtAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTcc < 1:682946/141‑1 (MQ=255) gtAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCa > 3:343592/1‑141 (MQ=255) gtAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCa < 1:797055/141‑1 (MQ=255) gtAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCa < 1:671369/141‑1 (MQ=255) aaTAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAAt > 1:82833/1‑141 (MQ=255) aTAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATa < 1:189338/141‑1 (MQ=255) aaGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACg < 3:181429/141‑1 (MQ=255) gAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAg < 2:840078/141‑1 (MQ=255) gAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAAACATGCAAGTATCACTGTCATACCAAATActat < 2:639091/141‑4 (MQ=255) aaCCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAgg < 2:267031/141‑1 (MQ=255) aaCCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAgg < 2:228766/141‑1 (MQ=255) aCCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGt > 2:959096/1‑141 (MQ=255) ccTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTa < 1:299052/141‑1 (MQ=255) ccTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTa > 2:945223/1‑141 (MQ=255) ccTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAAACGTCATTCCAAATACGAGGTTa > 1:657557/1‑141 (MQ=255) aTGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATCTTGTTAGGCATGCAAGGATAACCGTCATTCCCAATACGAGGGTACcg > 2:910517/1‑141 (MQ=255) tAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACcgaacg < 2:560916/141‑1 (MQ=255) agaAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCgaacgaac < 2:711785/141‑1 (MQ=255) agaAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCgaacgaac < 2:522827/141‑1 (MQ=255) gaAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCGTGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAAcc < 2:848398/141‑1 (MQ=255) gaAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGTACGCAcc > 1:803280/1‑141 (MQ=255) gaAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAAcc > 1:895615/1‑141 (MQ=255) aaTAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCaaa > 1:1086276/1‑141 (MQ=255) aTAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAaat < 2:490285/141‑1 (MQ=255) cGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTa < 1:935735/141‑1 (MQ=255) ttttATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGt < 4:291831/141‑1 (MQ=255) ttATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTg < 1:1065161/141‑1 (MQ=255) tataAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGt < 2:234664/141‑1 (MQ=255) ataAGAAAACTTAGGTAAGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGATGTa > 4:431134/1‑141 (MQ=255) aaGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACg < 2:339816/141‑1 (MQ=255) aGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGCCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGt > 4:55739/1‑141 (MQ=255) aaaCTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGCTGTACGTCaa > 2:824647/1‑141 (MQ=255) tAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAatatat < 1:410684/141‑1 (MQ=255) tAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAatatat > 2:255631/1‑141 (MQ=255) aGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATc < 4:274576/141‑1 (MQ=255) ggTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCt < 2:178336/141‑1 (MQ=255) ggTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCt > 2:530736/1‑141 (MQ=255) ggTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCt < 2:369497/141‑1 (MQ=255) gtgtTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTAcc > 3:247353/1‑141 (MQ=255) gtgtTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTAcc < 3:286768/141‑1 (MQ=255) gtgtTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTAcc < 4:30638/141‑1 (MQ=255) tttCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATc > 2:320550/1‑141 (MQ=255) ttAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTa < 4:57259/141‑1 (MQ=255) ttAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTa < 4:260422/141‑1 (MQ=255) ttAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTa < 2:402840/141‑1 (MQ=255) tAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTaa < 3:253024/141‑1 (MQ=255) tAGTAAATGTGGCGAAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTaa < 1:236542/141‑1 (MQ=255) gTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAg < 1:696072/141‑1 (MQ=255) tAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGt > 2:868270/1‑141 (MQ=255) aTGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCAGTCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTc < 1:10020/141‑1 (MQ=255) tgtgGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTcc < 1:528439/141‑1 (MQ=255) tgtgGCGCAAGCATTGACGAGTCCTATACATGTTGTTAAACATGCAAGTATCACTGTCATACCAAATACTATGTTGCCAAATGAACCAAATACTCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTcc < 1:261558/141‑1 (MQ=255) tgtgGCGCAAGCATTGACGAGTCCTATACATGTTGTTAAACATGCAAGTATCACTGTCATACCAAATACTATGTTGCC‑AATGAACCAAATACTCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCt < 1:731989/141‑1 (MQ=255) ggCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTgg < 2:990235/141‑1 (MQ=255) ggCGCAAGCATTGACGAGCCCTATACATGTTGTTAGGCATGCAAGGATAACCGCCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTgg > 2:795191/1‑141 (MQ=255) gcgcAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGa > 2:848064/1‑141 (MQ=255) cgcAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAg > 2:995559/1‑141 (MQ=255) cgcAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAg < 2:750470/141‑1 (MQ=255) gCATTGAAGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGCACCATCTTTAAAGTTTCCTGGAGCTGtt > 3:402943/1‑141 (MQ=255) cATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTg < 4:15055/141‑1 (MQ=255) ttGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTAACATCTTTAAAGTTTCCTGGAGCTGTTGAt > 2:55385/1‑141 (MQ=255) ttGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCCGTACCATCTTTAAAGTTTCCTGGAGCTGTTGAt > 2:695732/1‑141 (MQ=255) aCGAGTCCTATACATGTTGTTAAACATGCAAGTATCACTGTCATACCAAATACTATGTTGCCAAATGAACCAAATACTCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGcc < 1:1016404/141‑1 (MQ=255) gTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCaa < 4:180361/141‑1 (MQ=255) tCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAAc < 2:89429/141‑1 (MQ=255) ccTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACg < 2:750857/141‑1 (MQ=255) ccTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACg > 1:29403/1‑141 (MQ=255) ttgttAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTg > 3:313458/1‑141 (MQ=255) tgttAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGc < 2:420027/141‑1 (MQ=255) ttAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCaa > 3:282036/1‑141 (MQ=255) tAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCaaa < 1:128090/141‑1 (MQ=255) aGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAg > 1:630477/1‑141 (MQ=255) aGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAg < 3:217793/141‑1 (MQ=255) aGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAg > 1:344908/1‑141 (MQ=255) ggCATGCAAGTATAACCATCATTCCAAATACGTGCTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTACCTTGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGt < 4:223419/141‑1 (MQ=255) gCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTa > 1:1021331/1‑141 (MQ=255) gCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTa > 3:413486/1‑141 (MQ=255) gCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTCCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTa < 2:655332/141‑1 (MQ=255) aTGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTaaa < 1:777196/141‑1 (MQ=255) aTGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTaaa > 2:689651/1‑141 (MQ=255) tGCAAGGATAACCGTCATTCCAATTACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGGAAAt > 2:674397/1‑141 (MQ=255) cAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCa > 1:364017/1‑141 (MQ=255) aaGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCAt < 3:442104/141‑1 (MQ=255) | TCTAAACCAAGTGTTGTAAATAAGAACCCTATGATAGAGAAAATAAGTGCGAATATTTTATAAGAAAACTTAGGTACGTGTTTCTTAGTAAATGTGGCGCAAGCATTGACGAGTCCTATACATGTTGTTAGGCATGCAAGGATAACCGTCATTCCAAATACGAGGTTACCGAACGAACCAAATAATCGTAATGAGTTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCAT > USA300TCH1516_ALE/355714‑355991 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |