| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,034,893 | G→A | 5.2% | H62H (CAC→CAT) | USA300TCH1516_00961 ← | Lipoate‑‑protein ligase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,034,893 | 0 | G | A | 5.2% | 363.4 / 4.5 | 114 | H62H (CAC→CAT) | USA300TCH1516_00961 | Lipoate‑‑protein ligase 1 |
| Reads supporting (aligned to +/- strand): ref base G (51/57); new base A (3/3); total (54/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.89e-01 | |||||||||||
Only 100 of 124 total aligned reads displayed.
TTGAACAATTGGTTCAGTGAATTTTTGGAAATTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTAAAACATATTCTTCCATTGCTAA > USA300TCH1516_ALE/1034755‑1035033 | ttGAACAATTGGTTCAGTGAATTTTTGGAAATTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTtgtg < 2:924159/141‑1 (MQ=255) gAACAATTGGTTCAGTGAATTTTTTTTTTTTTTTTAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAg > 2:512987/1‑141 (MQ=255) aCAATTGGTTCAGTGAATTTTTGGAAATTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCa > 4:301007/1‑141 (MQ=255) aCAATTGGTTCAGTGAATTTTTGGAAATTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCa > 1:26919/1‑141 (MQ=255) ttGGTTCAGTGAATTTTTGGAAATTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGa < 1:249869/141‑1 (MQ=255) tGGTTCAGTGAATTTTTGGAAATTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGat > 2:626837/1‑141 (MQ=255) ttCAGTGAATTTTTGGAAATTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGatata < 4:76114/141‑1 (MQ=255) aTTTTTGGAAATTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTAACTACATCGATGTTATGAGCATCTATATATGTCTGAt < 2:473540/141‑1 (MQ=255) tttttGGAAATTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGAtt > 4:125254/1‑141 (MQ=255) tttttGGAAATTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACAACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGAtt < 3:436399/141‑1 (MQ=255) tttGGAAATTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTa > 1:464165/1‑141 (MQ=255) tttGGAAATTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTa < 3:325503/141‑1 (MQ=255) tGGAAATTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACt < 1:999272/141‑1 (MQ=255) ggAAATTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACtt > 1:174581/1‑141 (MQ=255) ggAAATTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACtt > 1:529001/1‑141 (MQ=255) aTTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCctc < 4:322342/141‑1 (MQ=255) gAAACTGTTACCATCATCATCTGTTATACAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGt < 3:20225/141‑1 (MQ=255) gAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGt < 1:504160/141‑1 (MQ=255) cTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTAttt < 1:474691/141‑1 (MQ=255) tGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTAtttt < 2:1030853/141‑1 (MQ=255) tGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTAtttt < 2:484132/141‑1 (MQ=255) tGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTAACTACATCGATGTTATGAGCATCTATATATGTCTGATTTACTTCCTCTATCGTAtttt < 3:128717/141‑1 (MQ=255) ttACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGa > 1:123934/1‑141 (MQ=255) aCCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGAtt < 1:241773/141‑1 (MQ=255) aCCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGAtt > 2:967621/1‑141 (MQ=255) ccATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTc > 2:276325/1‑141 (MQ=255) catcatcgtCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTAATTCt > 1:857869/1‑141 (MQ=255) catcatcatCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCt < 2:956038/141‑1 (MQ=255) catcatcatCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCAACGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCt < 2:919746/141‑1 (MQ=255) tcTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCcaaca < 1:1064342/141‑1 (MQ=255) tGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAAt > 2:370898/1‑141 (MQ=255) gTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATg > 1:596598/1‑141 (MQ=255) gTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATg > 3:240211/1‑141 (MQ=255) aaaaCTAAAGTTTACAGCTCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGa < 1:603952/141‑1 (MQ=255) aaaCTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGAt < 3:429/141‑1 (MQ=255) aaCTANAGTTTAACTTGCCAGTATCCTGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGTATCGATATATGTCTGATTTACTTCCTCTNTCGTATTTTGATTCTTTCCAACAATGATAGATg < 1:132987/141‑1 (MQ=255) tAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTc < 2:104109/141‑1 (MQ=255) tAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTc > 2:1065617/1‑141 (MQ=255) aaaGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCt > 2:330937/1‑141 (MQ=255) aaGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTa < 2:715775/141‑1 (MQ=255) gTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTGTCGTATTTTGATTCTTTCCAACAATGTTAGATGGTCTAtt > 1:288911/1‑141 (MQ=255) aaaTTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATg < 3:190337/141‑1 (MQ=255) aaTTGCCAGTATCATGATAAACAGCGCCACTACCAGAAATTCTTCTTACTACTTCTATGTTGTGAGCATCGATATATGTCTGATTTACTTTCTCTATCGTATTTTGATTCTTTCCAACTATGATAGATAGTCTATTTATGt < 4:274331/141‑1 (MQ=255) aaTTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGt > 3:323754/1‑141 (MQ=255) aTTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATTGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGta < 2:197666/141‑1 (MQ=255) aTTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGta < 1:141189/141‑1 (MQ=255) aTTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGta > 2:49933/1‑141 (MQ=255) gCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATGTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGtaaaa < 4:31810/141‑1 (MQ=255) ccAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGtaaaat < 1:265238/141‑1 (MQ=255) aTCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATaaaaa < 2:893459/141‑1 (MQ=255) tCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAg > 2:374566/1‑141 (MQ=255) cATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGt < 4:408751/141‑1 (MQ=255) cATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGt < 4:26581/141‑1 (MQ=255) aTGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTa < 1:691814/141‑1 (MQ=255) gATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAAc > 2:340035/1‑141 (MQ=255) gATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAAc > 1:669101/1‑141 (MQ=255) aTAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACt < 1:337950/141‑1 (MQ=255) aTAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGATGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACt < 3:64665/141‑1 (MQ=255) aaaCAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACttt < 4:438448/141‑1 (MQ=255) aaaCAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACttt > 4:80803/1‑141 (MQ=255) aaaCAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACttt > 2:614821/1‑141 (MQ=255) aaaCAGCGCCACCAACAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACttt < 4:438446/141‑1 (MQ=255) aGCGCCACCACCAGAAATTCTTCTTACTACATCGAGGTCGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGAATATGTATGTAAAATAAAAAGTAANGtccttc > 2:813005/1‑141 (MQ=255) gcgcCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTtcttct > 3:61616/1‑141 (MQ=255) cgcCACCACCAGACATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTctg > 2:98404/1‑141 (MQ=255) ccaccaccaGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTctgct < 1:255808/141‑1 (MQ=255) caccaccaGAAATGCTTCTAACTACATCGATGTTATGAGCATCTATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATACAAAGTAACTTTCTTctgctg > 4:455876/1‑141 (MQ=255) caccaccaGAAATGCTTCTAACTACATCGATGTTATGAACATCTATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAGAAAGTAACTTTCTTctgctt > 4:455982/1‑140 (MQ=255) accaccaGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTgg < 2:605801/141‑1 (MQ=255) accaccaGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTgg < 1:486156/141‑1 (MQ=255) accaccaGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTgg < 3:231155/141‑1 (MQ=255) ccaccaGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGt > 1:231895/1‑141 (MQ=255) ccaGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTAATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTaaa < 2:786267/141‑1 (MQ=255) caGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAAt > 3:87225/1‑141 (MQ=255) aGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAAtt > 1:913/1‑141 (MQ=255) gAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAAttt < 1:729597/141‑1 (MQ=255) aaaTTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAAtttt < 2:596598/141‑1 (MQ=255) aaaTTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAAtttt > 4:133966/1‑141 (MQ=255) aaaTTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAAtttt > 2:919607/1‑141 (MQ=255) aaaTTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAAtttt > 2:284171/1‑141 (MQ=255) aaTTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAAttttt < 2:122772/141‑1 (MQ=255) aaTTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTAGTAAAttttt < 3:202757/141‑1 (MQ=255) ttcttcTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTa > 1:834695/1‑141 (MQ=255) tcttctTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTaa > 3:191896/1‑141 (MQ=255) cttcttACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTaaa > 1:777575/1‑141 (MQ=255) cttcttACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTaaa > 4:221275/1‑141 (MQ=255) cttctaACTACATCGATGTTATGAGCATCTATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCca < 4:104032/75‑1 (MQ=255) cttctaACTACATCGATGTTATGAGCATCTATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCca > 3:104032/1‑75 (MQ=255) ttACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTAAAACat < 1:400382/141‑1 (MQ=255) ttACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTAAAACat < 1:994309/141‑1 (MQ=255) tactacATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTAAAACata < 2:698520/141‑1 (MQ=255) aTCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTAAAACATAttcttc < 1:756570/141‑1 (MQ=255) gATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTAAAACATATTCTTCCAt > 3:194190/1‑141 (MQ=255) aTGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTAAAACATATTCTTCCAtt < 3:64679/141‑1 (MQ=255) tgttgtGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTAAAACATATTCTTCCATTg > 2:166706/1‑141 (MQ=255) gttgtGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTAAAACATATTCTTCCATTGc > 1:731933/1‑141 (MQ=255) gttgtGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTAAAACATATTCTTCCATTGc < 2:677596/141‑1 (MQ=255) gttgtGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTAAAACATATTCTTCCATTGc > 1:440958/1‑141 (MQ=255) gttgtGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTAAAACATATTCTTCCATTGc < 1:67694/141‑1 (MQ=255) ttgtGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTAAAACATATTCTTCCATTGCt < 3:417770/141‑1 (MQ=255) | TTGAACAATTGGTTCAGTGAATTTTTGGAAATTGTGGAAACTGTTACCATCATCATCTGTTATAAAACTAAAGTTTAAATTGCCAGTATCATGATAAACAGCGCCACCACCAGAAATTCTTCTTACTACATCGATGTTGTGAGCATCGATATATGTCTGATTTACTTCCTCTATCGTATTTTGATTCTTTCCAACAATGATAGATGGTCTATTTATGTAAAATAAAAAGTAACTTTCTTCTGCTGGTAAATTTTTTAAAACATATTCTTCCATTGCTAA > USA300TCH1516_ALE/1034755‑1035033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |