New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 = 2352168 (1.070)8 (0.010) 4/258 13.4 1.00% intergenic (+132/+36) USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004 hypothetical protein/hypothetical protein
?NC_012417 = 1963 1436 (1.030)intergenic (+196/+130) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 117 total aligned reads displayed.

TTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑ACAAGTTTTGGGATTGTTAAGGGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000731/2203‑2352
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttaagggttc‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  <  NC_012417/1963‑1824
                                                                                                                                                                                                                                                                                                           
  TTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑ACAAGTTTTGGGATTGTTA                                                                                                                                                           <  1:341043/141‑1
    ATGATGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑ACAAGTTTTGGGATTGTTAAG                                                                                                                                                         <  2:65538/141‑1
    ATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑ACAAGTTTTGGGATTGTTAAG                                                                                                                                                         <  2:100692/141‑1
     TGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑ACAAGTTTTGGGATTGTTAAGG                                                                                                                                                        >  2:500657/1‑141
     TGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑ACAAGTTTTGGGATTGTTAAGG                                                                                                                                                        >  1:2585/1‑141
       AGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑ACAAGTTTTGGGATTGTTAAGGGT                                                                                                                                                      >  1:496492/1‑141
       AGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑ACAAGTTTTGGGATTGTTAAGGGT                                                                                                                                                      >  1:36963/1‑141
                                                             GAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTCTGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATC                                                                                       >  2:284886/1‑141
                                                              AACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑ACAAGTTTTGGGATTGTTAAGGGTTCCGAGG‑‑‑CTCAACGTCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTA                                                                                            >  1:19400/1‑141
                                                                 CCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑ACAAGTTTTGGGATTGTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT                                                                                      >  1:531176/1‑141
                                                                 CCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑ACAAGTTTTGGGATTGTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT                                                                                      >  2:167883/1‑141
                                                                        TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑ACAAGTTTTGGGATTGTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGAT                                                                               >  2:138906/1‑141
                                                                            CTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑ACAAGTTT‑‑‑‑A‑‑GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTT                                                                     >  2:63622/1‑141
                                                                                CAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑ACAAGTTTTGGGATTGTTAAGGGTTC‑‑‑CGAGGCTCAACGTCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCA                                                                          >  1:117418/1‑141
                                                                                                                                              GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTTTATTTTTGATTAGCTTCATTATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            <  1:227142/141‑1
                                                                                                                                              GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            <  1:22586/141‑1
                                                                                                                                              GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            <  2:69368/141‑1
                                                                                                                                              GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            <  1:532002/141‑1
                                                                                                                                              GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            >  2:526820/1‑141
                                                                                                                                              GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            >  2:209619/1‑141
                                                                                                                                              GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            >  2:465263/1‑141
                                                                                                                                              GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            <  2:258149/141‑1
                                                                                                                                              GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            >  2:268545/1‑141
                                                                                                                                              GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            >  2:27009/1‑141
                                                                                                                                              GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            <  2:313874/141‑1
                                                                                                                                              GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            <  2:326885/141‑1
                                                                                                                                              GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAAC            >  1:250700/1‑141
                                                                                                                                              GTTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTAAAAAAAAACAAAAAGTAAGCAACAAC            <  2:48594/141‑1
                                                                                                                                               TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATTTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           >  2:345552/1‑141
                                                                                                                                               TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           <  1:16111/141‑1
                                                                                                                                               TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           >  1:508676/1‑141
                                                                                                                                               TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           <  2:373422/141‑1
                                                                                                                                               TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           <  1:448361/141‑1
                                                                                                                                               TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           >  2:67994/1‑141
                                                                                                                                               TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           >  2:413055/1‑141
                                                                                                                                               TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           >  2:140814/1‑141
                                                                                                                                               TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           >  2:333358/1‑141
                                                                                                                                               TTAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGGCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACA           >  1:342806/1‑141
                                                                                                                                                TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          >  2:132784/1‑141
                                                                                                                                                TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          <  2:11210/141‑1
                                                                                                                                                TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          <  2:409207/141‑1
                                                                                                                                                TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          >  2:323846/1‑141
                                                                                                                                                TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          >  1:540795/1‑141
                                                                                                                                                TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          >  1:160641/1‑141
                                                                                                                                                TAAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACAC          >  1:147057/1‑141
                                                                                                                                                 AAGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACC         <  2:359637/141‑1
                                                                                                                                                  AGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAGAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCA        >  1:447259/1‑141
                                                                                                                                                  AGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCA        >  1:333508/1‑141
                                                                                                                                                  AGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCA        <  1:520831/141‑1
                                                                                                                                                  AGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCA        <  1:282750/141‑1
                                                                                                                                                  AGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCA        >  2:167829/1‑141
                                                                                                                                                  AGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCA        >  2:119161/1‑141
                                                                                                                                                  AGGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCA        >  2:344580/1‑141
                                                                                                                                                   GGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAA       >  2:272053/1‑141
                                                                                                                                                   GGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAA       >  2:288727/1‑141
                                                                                                                                                   GGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAA       >  2:474028/1‑141
                                                                                                                                                   GGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAA       >  2:314383/1‑141
                                                                                                                                                   GGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAA       >  2:52980/1‑141
                                                                                                                                                   GGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAA       >  1:14410/1‑141
                                                                                                                                                   GGGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAA       >  1:516084/1‑141
                                                                                                                                                    GGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAAT      >  1:234641/1‑141
                                                                                                                                                    GGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAAT      >  1:441984/1‑141
                                                                                                                                                    GGTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAAT      >  1:47153/1‑141
                                                                                                                                                    GGTTC‑‑‑TA‑‑‑CTCAACATCAATAAAATTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTAAAAAAAAACAAAAAGTAAGCAACAACACCAAT      <  2:470617/141‑1
                                                                                                                                                     GTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATA     <  1:260206/141‑1
                                                                                                                                                     GTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATA     <  1:392736/141‑1
                                                                                                                                                     GTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATA     >  1:260786/1‑141
                                                                                                                                                     GTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATA     <  1:107814/141‑1
                                                                                                                                                     GTTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATA     <  1:467631/141‑1
                                                                                                                                                      TTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAG    <  1:38808/141‑1
                                                                                                                                                      TTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAG    <  1:170995/141‑1
                                                                                                                                                      TTC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTAAAAAAAAAACAAAAAGTAAGCAACAACACCAATAG    <  2:107096/141‑1
                                                                                                                                                       TC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGG   >  1:172068/1‑141
                                                                                                                                                       TC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGG   >  1:312906/1‑141
                                                                                                                                                       TC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGG   >  1:348702/1‑141
                                                                                                                                                       TC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGG   >  1:553747/1‑141
                                                                                                                                                       TC‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGAATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGG   >  1:5177/1‑141
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTTTTTTCTTGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  2:132924/1‑141
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCTTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  2:16475/1‑141
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  <  2:483455/141‑1
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:169381/1‑141
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:165501/1‑141
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  <  1:141502/141‑1
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:12830/1‑141
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  <  1:507437/141‑1
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  2:81366/1‑141
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:196951/1‑141
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:214703/1‑141
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:329827/1‑141
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:334711/1‑141
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  <  2:255133/141‑1
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:344707/1‑141
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  2:191924/1‑141
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  2:16085/1‑141
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:358681/1‑141
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  <  1:400970/141‑1
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  1:552945/1‑141
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAAAAAAATTAAGCAACAACACCAATAGaa  >  1:301514/1‑139
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTAAAAAAAAACAAAAAGTAAGCAACAACACCAATAGGA  <  2:254565/141‑1
                                                                                                                                                        C‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAAACATATTTTTTTTTTTTTTTTTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  >  2:519227/1‑141
                                                                                                                                                                                                                                                                                                           
TTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑ACAAGTTTTGGGATTGTTAAGGGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000731/2203‑2352
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttaagggttc‑‑‑TT‑‑‑CTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGA  <  NC_012417/1963‑1824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.