| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2457361 = | 64 (1.260) | 4 (0.090) | 3/254 | 4.9 | 7.8% | intergenic (+40/+196) | USA300HOU_RS12645/mro | hypothetical protein/Aldose 1‑epimerase |
| ? | USA300TCH1516_ALE | 2457434 = | 37 (0.800) | intergenic (+113/+123) | USA300HOU_RS12645/mro | hypothetical protein/Aldose 1‑epimerase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGAATAGGTTATCAAGAATCGTATCAAATGAAGTGACATCATTAATATACAGTTTGAAATAAAGAAAATATATAACATAAAAAAGGAATCAATAGCATCAGTGGTTATAGATAAGACTATTATACAAACGATGTGTAAGTTGATTCCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2457513‑2457361‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgattcctttttTATGTTATATATTTTCTTTATTTCAAACTGTATATTAATGATGTCACTTCATTTGATACGATTCTTGATAACCTATTCAAAATTCCGCCAAATAACATAAATATTATATAAATGCCGATACTTTTAATCATTTTCTA > USA300TCH1516_ALE/2457434‑2457570 TTGAATAGGTTATCAAGAATCGTATCAAATGAAGTGACATCATTAATATACAGTTTGAAATAAAGAAAATATATAACATAAAAAAGGAATCAATAGCATCAGTGGTTATAGATAAGACTATTATACAAACGATGTGTAAGT < 2:85778/141‑1TTGAATAGGTTATCAAGAATCGTATCAAATGAAGTGACATCATGAATATACAGTTTGAAATAAAGAAAATATATAACATAAAAAAGGAATCAATAGCATCAGTGGTTATAGATAAGACTATTATACAAACGATGTGTAAGT < 1:447200/141‑1 GGTTATCAAGAATCGTATCAAATGAAGTGACATCATTAATATACAGTTTGAAATAAAGAAAATATATAACATAAAAAAGGAATCAATAGCATCAGTGGTTATAGATAAGACTATTATACAAACGATGTGTAAGTTGATTCC < 1:359926/141‑1 GGTTATCAAGAATCGTATCAAATGAAGTGACATCATTAATATACAGTTTGAAATAAAGAAAATATATAACATAAAAAAGGAATCAATAGCATCAGTGGTTATAGATAAGACTATTATACAAACGATGTGTAAGTTGATTCC < 1:460127/141‑1 TTATCAAGAATCGTATCAAATGAAGTGACATCATTAATATACAGTTTGAAATAAAGAAAATATATAACATAAAAAAGGAATCAATAGCATCAGTGGTTATAGATAAGACTATTATACAAACGATGTGTAAGTTGATTCCTT > 2:286899/1‑141 TATCAAGAATCGTATCAAATGAAGTGACATCATTAATATACAGTTTGAAATAAAGAAAATATATAACATAAAAAAGGAATCAATAGCATCAGTGGTTATAGATAAGACTATTATACAAACGATGTGTAAGTTGATTCCTTT < 2:377651/141‑1 TATCAAGAATCGTATCAAATGAAGTGACATCATTAATATACAGTTTGAAATAAAGAAAATATATAACATAAAAAAGGAATCAATAGCATCAGTGGTTATAGATAAGACTATTATACAAACGATGTGTAAGTTGATTCCTTT < 2:471319/141‑1 TATCAAGAATCGTATCAAATGAAGTGACATCATTAATATACAGTTTGAAATAAAGAAAATATATAACATAAAAAAGGAATCAATAGCATCAGTGGTTATAGATAAGACTATTATACAAACGATGTGTAAGTTGATTCCTTT < 2:55287/141‑1 TCAAGAATCGTATCAAATGAAGTGACATCATTAATATACAGTTTGAAATAAAGAAAATATATAACATAAAAAAGGAATCAATAGCATCAGTGGTTATAGATAAGACTATTATACAAACGATGTGTAAGTTGATTCCTTTTT > 2:189686/1‑141 ACATAAAAAAGGAATCAATAGCATCAGTGGTTATAGATAAGACTATTATACAAACGATGTGTAAGTTGATTCCTTTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAATGATGTCACTTCATTTGATACGATT > 1:420979/1‑141 GGAATCAATAGCATCAGTGGTTATAGATAAGACTATTATACAAACGATGTGTAAGTTGATTCCTTTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAATGATGTCACTTCATTTGATACGATTCTTGATAACC > 1:405370/1‑141 GGAATCAATAGCATCAGTGGTTATAGATAAGACTATTATACAAACGATGTGT‑AGTTGATTCCTTTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAATGATGTCACTTCATTTGATACGATTCTTGATAACCT > 2:291628/1‑141 AGTTGATTCCTTTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAATGATGTCACTTCATTTGATACGATTCTTGATAACCTATTCAAAATTCCGCCAAATAACATAAATATTATATAAATGCCGATACTTTTA < 2:405370/141‑1 CTTTTTTATTTTTTATATTTTCTTTATTTCAAACTGTATATTAATGATGTCACTTCATTTGATACGATTCTTGATAACCTATTCAAAATTCCGCCAAATAACATAAATATTATATAAATGCCGATACTTTTAATCATTTTC > 2:352372/1‑141 TTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAATGATGTCACTTCATTTGATACGATTCTTGATAACCTATTCAAAATTCCGCCAAATAACATAAATATTATATAAATGCCGATACTTTTAATCATTTTCTA < 1:206785/141‑1 TTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAATGATGTCACTTCATTTGATACGATTCTTGATAACCTATTCAAAATTCCGCCAAATAACATAAATATTATATAAATGCCGATACTTTTAATCATTTTCTA < 2:149084/141‑1 TTGAATAGGTTATCAAGAATCGTATCAAATGAAGTGACATCATTAATATACAGTTTGAAATAAAGAAAATATATAACATAAAAAAGGAATCAATAGCATCAGTGGTTATAGATAAGACTATTATACAAACGATGTGTAAGTTGATTCCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2457513‑2457361‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgattcctttttTATGTTATATATTTTCTTTATTTCAAACTGTATATTAATGATGTCACTTCATTTGATACGATTCTTGATAACCTATTCAAAATTCCGCCAAATAACATAAATATTATATAAATGCCGATACTTTTAATCATTTTCTA > USA300TCH1516_ALE/2457434‑2457570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |