BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 2937	740 (0.900)	9 (0.010)	7/270	42.5	1.3%	intergenic (‑263/–)	USA300HOU_RS14900/–	hypothetical protein/–
*	?	NC_012417	= 2949	687 (0.860)	9 (0.010)	7/270	42.5	1.3%	intergenic (‑275/–)	USA300HOU_RS14900/–	hypothetical protein/–
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 750 total aligned reads displayed.

ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGT  >  NC_012417/2797‑3077

 tttttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACg                                                                                                                                             <  1:190552/141‑1 (MQ=255)

 tttttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACg                                                                                                                                             >  1:136128/1‑141 (MQ=255)

 tttttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCACAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACg                                                                                                                                             >  1:282152/1‑141 (MQ=255)

   tttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                                           >  2:207846/1‑141 (MQ=255)

   tttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                                           <  1:200005/141‑1 (MQ=255)

   tttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                                           >  1:87022/1‑141 (MQ=255)

   tttaattttGTTAATTCGAGTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                                           <  2:103124/141‑1 (MQ=255)

    ttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTAATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgt                                                                                                                                          <  2:142398/141‑1 (MQ=255)

     taattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgtg                                                                                                                                         <  1:76236/141‑1 (MQ=255)

      aattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGTTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgtgt                                                                                                                                        >  1:155828/1‑141 (MQ=255)

       attttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTAAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAActcgttca                                                                                                                                       <  2:290745/141‑8 (MQ=255)

        ttttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGa                                                                                                                                      <  1:121024/141‑1 (MQ=255)

        ttttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGa                                                                                                                                      <  2:110655/141‑1 (MQ=255)

         tttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGaa                                                                                                                                     <  2:6879/141‑1 (MQ=255)

           tGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                                                                   <  1:98469/141‑1 (MQ=255)

           tGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                                                                   <  1:230973/141‑1 (MQ=255)

               aaTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGtt                                                                                                                               >  2:39652/1‑141 (MQ=255)

                 ttCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttc                                                                                                                             <  2:119176/141‑1 (MQ=255)

                 ttCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttc                                                                                                                             <  2:42110/141‑1 (MQ=255)

                 ttCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttc                                                                                                                             >  2:191997/1‑141 (MQ=255)

                 ttCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttc                                                                                                                             <  1:270261/141‑1 (MQ=255)

                  tCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                                                                            <  1:127868/141‑1 (MQ=255)

                   cGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttctt                                                                                                                           <  2:158100/141‑1 (MQ=255)

                   cGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttctt                                                                                                                           <  1:205746/141‑1 (MQ=255)

                   cGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttctt                                                                                                                           <  2:298660/141‑1 (MQ=255)

                   cGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTCTTGAAACGAGTGTGAACGAGTttctt                                                                                                                           >  2:241298/1‑141 (MQ=255)

                    gtttttATTTGATTATTCTTTTTACTTTTTAGATAGTTTTATTTATTTATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGATTAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  2:216173/139‑1 (MQ=255)

                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  2:266298/141‑1 (MQ=255)

                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  2:238395/141‑1 (MQ=255)

                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  1:180607/141‑1 (MQ=255)

                      ttttATTTGATAATCTTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                                        <  1:252788/141‑1 (MQ=255)

                      ttttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                                        <  1:36247/141‑1 (MQ=255)

                      ttttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                                        <  1:210935/141‑1 (MQ=255)

                       tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:54961/141‑1 (MQ=255)

                       tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:169309/141‑1 (MQ=255)

                       tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:186991/141‑1 (MQ=255)

                       tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACAGTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:270291/141‑1 (MQ=255)

                        ttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgt                                                                                                                      <  2:231095/141‑1 (MQ=255)

                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  1:14028/141‑1 (MQ=255)

                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  2:302513/141‑1 (MQ=255)

                          aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                    <  2:77401/141‑1 (MQ=255)

                             tGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGa                                                                                                                 >  1:259784/1‑141 (MQ=255)

                                tAATCCTTTTGACTTGGTAGAAAGATCTATTGATTCATTGGTTTTCACATTAATTTATTTAGGTTTAAAAAAAAATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATAc                                                                                                              <  2:27942/141‑1 (MQ=37)

                                 aaTCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGGTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACt                                                                                                             <  1:92081/141‑1 (MQ=255)

                                  aTCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACta                                                                                                            <  2:126234/141‑1 (MQ=255)

                                        ttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGa                                                                                                      >  2:166488/1‑141 (MQ=255)

                                         tGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaa                                                                                                     <  1:81404/141‑1 (MQ=255)

                                           aCTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAAt                                                                                                   >  1:24706/1‑141 (MQ=255)

                                             tttttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATaa                                                                                                 >  2:32772/1‑141 (MQ=255)

                                              ttttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                                <  1:114852/141‑1 (MQ=255)

                                               tttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                                                                               <  1:274411/141‑1 (MQ=255)

                                                   gAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAt                                                                                           >  1:266246/1‑141 (MQ=255)

                                                    aaaGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtt                                                                                          >  1:72506/1‑141 (MQ=255)

                                                      aGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtttt                                                                                        >  1:29494/1‑141 (MQ=255)

                                                       gTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTta                                                                                       <  2:210502/141‑1 (MQ=255)

                                                       gTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTta                                                                                       <  1:150394/141‑1 (MQ=255)

                                                                 ttCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAATTGAGTGTGAACGAGTTTGTTCTTGTCTTGATACTATATAGAAATCACTCGATTTTATATATATAGc                                                                             >  2:27287/1‑141 (MQ=255)

                                                                 ttCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGc                                                                             <  2:261104/141‑1 (MQ=255)

                                                                 ttCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGc                                                                             >  2:64370/1‑141 (MQ=255)

                                                                  tCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCt                                                                            <  2:8687/141‑1 (MQ=255)

                                                                    aTTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGt                                                                          <  1:17237/141‑1 (MQ=255)

                                                                     ttGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTa                                                                         >  1:195792/1‑141 (MQ=255)

                                                                     ttGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATACAGCTGTa                                                                         <  1:241298/141‑1 (MQ=255)

                                                                         ttttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTg                                                                     <  2:49984/141‑1 (MQ=255)

                                                                          tttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGt                                                                    >  1:185313/1‑141 (MQ=255)

                                                                             cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTTATACGATTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGa                                                                 >  2:20167/1‑141 (MQ=255)

                                                                             cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGa                                                                 >  2:172620/1‑141 (MQ=255)

                                                                              acaTTAATTTATTTAGGTTTAGAGAGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGat                                                                <  1:160479/141‑1 (MQ=255)

                                                                                aTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGTAACTAGTTTGAACTAGTTTCTTCTTGTATTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGatat                                                              >  2:80337/1‑141 (MQ=255)

                                                                                aTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGatat                                                              <  2:224137/141‑1 (MQ=255)

                                                                                 ttAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTTATTTTTTTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATAtt                                                             >  2:95998/1‑141 (MQ=255)

                                                                                 ttAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATAtt                                                             >  2:59929/1‑141 (MQ=255)

                                                                                 ttAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATAtt                                                             >  1:51540/1‑141 (MQ=255)

                                                                                     tttatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTTTTTTTTTTTTGAACGAGATTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACat                                                         >  2:284887/1‑140 (MQ=255)

                                                                                     tttatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAg                                                         <  1:100128/141‑1 (MQ=255)

                                                                                       tatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtg                                                       <  2:136128/141‑1 (MQ=255)

                                                                                       tatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtg                                                       >  2:288585/1‑141 (MQ=255)

                                                                                       tatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtg                                                       >  1:41594/1‑141 (MQ=255)

                                                                                         tttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGtt                                                     >  2:250594/1‑141 (MQ=255)

                                                                                              gTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAAc                                                >  1:287538/1‑141 (MQ=255)

                                                                                              gTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCCGTAACTGTTGATATTACAGTGTTTAAAc                                                >  1:303114/1‑141 (MQ=255)

                                                                                                   gagGGTCATAAAAAGAAGAAGGAATAGGTGGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtt                                           <  1:109174/141‑1 (MQ=255)

                                                                                                    agGGTCATAAAAAGAAGAAGGAATAGGTTGATTTTTGAAACGAGTGTGAACGCGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGCTATTACAGTGCTTAAACGTGttt                                          >  2:180958/1‑141 (MQ=255)

                                                                                                     gggTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtttt                                         >  1:222922/1‑141 (MQ=255)

                                                                                                     gggTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtttt                                         <  1:23568/141‑1 (MQ=255)

                                                                                                       gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                       <  2:195972/141‑1 (MQ=255)

                                                                                                       gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                       <  1:13016/141‑1 (MQ=255)

                                                                                                       gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                       <  2:254205/141‑1 (MQ=255)

                                                                                                             aaaaGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTg                                 >  1:58058/1‑141 (MQ=255)

                                                                                                                  aagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTTTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                            <  1:299001/141‑1 (MQ=255)

                                                                                                                  aagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                            <  2:130092/141‑1 (MQ=255)

                                                                                                                  aagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                            <  1:170996/141‑1 (MQ=255)

                                                                                                                   agaagGAATAGGTTGTTTTTTGAAACGAGTGTGACAGAGATCCTTTGTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGa                           >  1:146380/1‑141 (MQ=255)

                                                                                                                        gAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAAtt                      >  1:215175/1‑141 (MQ=255)

                                                                                                                         aaTAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAAttt                     <  2:108428/141‑1 (MQ=255)

                                                                                                                            aGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGAc                  <  1:64560/141‑1 (MQ=255)

                                                                                                                             ggTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACa                 >  2:16075/1‑141 (MQ=255)

                                                                                                                                   tttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaa           <  2:146752/141‑1 (MQ=255)

                                                                                                                                   tttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATAGATATAGCTGTAACTGTTGATATTACAGTGTTTACACGTGTTTTTGTGCGTGTAAGGAAAATTTGAAAATaaaa           <  2:219049/141‑1 (MQ=255)

                                                                                                                                          aaCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCa    <  2:153801/141‑1 (MQ=255)

ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGT  >  NC_012417/2797‑3077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.