BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000731	81	N→G	100%	intergenic (–/‑151)	– / → repA	–/replication protein A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000731	81	0	N	G	100.0%	333.4 / NA	100	intergenic (–/‑151)	–/repA	–/replication protein A
Reads supporting (aligned to +/- strand): ref base N (0/0); new base G (61/39); total (61/39)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGA  >  CP000731/1‑220

gatatttatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGa                                                                                                                                            >  1:94‑M1/60‑141 (MQ=255)

 atatttatcaatgtttgataaacccttgataaagctatattttcccttgtataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGaa                                                                                                                                           >  2:358936‑M1/59‑141 (MQ=255)

    tttatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACt                                                                                                                                        >  1:131441‑M1/56‑141 (MQ=255)

     ttatcaatggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTg                                                                                                                                       >  2:292273‑M1/55‑141 (MQ=255)

     ttatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTg                                                                                                                                       >  1:117845‑M1/55‑141 (MQ=255)

       atcaagggtttataaaccattgatatagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtt                                                                                                                                     >  2:280474‑M1/53‑141 (MQ=255)

       ataaatggtttataagcctttgatacagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtt                                                                                                                                     >  2:280536‑M1/53‑141 (MQ=255)

        tcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAGCTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGttt                                                                                                                                    <  1:298558‑M1/90‑1 (MQ=255)

        tcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGttt                                                                                                                                    <  2:115997‑M1/90‑1 (MQ=255)

             ggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTCCTATCTCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                                                                                               <  1:314924‑M1/95‑1 (MQ=255)

              gtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                                                                                              >  1:103233‑M1/46‑141 (MQ=255)

                ttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatat                                                                                                                            >  1:395477‑M1/44‑141 (MQ=255)

                 tataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTTATATAACAAAAACCCCAAATACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTTTTtatata                                                                                                                           <  2:231291‑M1/99‑1 (MQ=255)

                 tataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatata                                                                                                                           <  1:231305‑M1/99‑1 (MQ=255)

                 tataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatata                                                                                                                           <  1:266997‑M1/99‑1 (MQ=255)

                 tataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatata                                                                                                                           <  1:143532‑M1/99‑1 (MQ=255)

                          ttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAGACCCCAACTACTTGTAATAGTCGGGGTTTGGTAATAAAACATTTAGAAACTGTTTATTTATATAATTTTCGAt                                                                                                                  >  2:379294‑M1/34‑141 (MQ=255)

                          ttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGAt                                                                                                                  >  1:343805‑M1/34‑141 (MQ=255)

                           tgataaaggtatattttactttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATa                                                                                                                 >  2:208215‑M1/33‑141 (MQ=255)

                           tgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATCATTTTCGATa                                                                                                                 <  2:144084‑M1/109‑1 (MQ=255)

                             ataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACt                                                                                                               >  2:130876‑M1/31‑141 (MQ=255)

                             ataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACt                                                                                                               >  1:343882‑M1/31‑141 (MQ=255)

                              taaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACtt                                                                                                              <  1:44491‑M1/112‑1 (MQ=255)

                              aaaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACtt                                                                                                              >  1:328126‑M1/30‑141 (MQ=255)

                                aagctatattttcccttttataagtttATTTAAAATGCTATAAGAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGt                                                                                                            >  1:292640‑M1/28‑141 (MQ=255)

                                 atctttattttcccttttataagtttATTTAAAGTGCTAGAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGta                                                                                                           >  2:322974‑M1/27‑141 (MQ=255)

                                 agctatattttcccttttgtaagtgtATTTAAAGTGGTATGATAAACTTAATATAACAAAGACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGta                                                                                                           >  1:183976‑M1/27‑141 (MQ=255)

                                 agctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGta                                                                                                           >  1:256412‑M1/27‑141 (MQ=255)

                                     atattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATTACAGGTGTAGAAACTGTTTATTTATATAATTTTCGATACTTGtattat                                                                                                       <  1:404667‑M1/119‑1 (MQ=255)

                                     atattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtattat                                                                                                       >  1:278748‑M1/23‑141 (MQ=255)

                                       attttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACACCAACTACTGGTAATAGTCGGAGTTTGGTATTAAAACGTTTAGAAACTTCTTATTTATATAATTTTCGATCATTCTATtatat                                                                                                     <  2:386778‑M1/121‑1 (MQ=255)

                                        ttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtatata                                                                                                    <  1:230865‑M1/122‑1 (MQ=255)

                                           ttcctgttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATg                                                                                                 >  2:83350‑M1/17‑141 (MQ=255)

                                           tcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATg                                                                                                 >  2:298558‑M1/17‑141 (MQ=255)

                                              cttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaat                                                                                              >  1:195768‑M1/14‑141 (MQ=255)

                                              cttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaat                                                                                              >  1:272164‑M1/14‑141 (MQ=255)

                                                tttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataa                                                                                            >  2:168473‑M1/12‑141 (MQ=255)

                                                tttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataa                                                                                            >  1:320601‑M1/12‑141 (MQ=255)

                                                 ttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataat                                                                                           <  1:329523‑M1/131‑1 (MQ=255)

                                                      agtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCtt                                                                                      <  2:272570‑M1/136‑1 (MQ=255)

                                                       gtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATCGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATCAATAATATATTa                                                                                     <  2:145549‑M1/137‑1 (MQ=255)

                                                        tttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAg                                                                                    >  1:345800‑M1/4‑141 (MQ=255)

                                                           aTTTAAAGTGCTATAATCAACTTAATATAACAAAAACCCCAACTACTGGTAATCGTAGACGGTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTatttc                                                                                 >  2:93249/1‑137 (MQ=255)

                                                                aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCa                                                                            >  1:237173/1‑141 (MQ=255)

                                                                 aGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATGTATATAATTTTCGATAATCGTAGTAGATACTGTAAAATAACTTAGTGCAAGCaa                                                                           >  2:302568/1‑140 (MQ=255)

                                                                 aGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGATAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGAAc                                                                           >  2:407669/1‑141 (MQ=255)

                                                                 aGTGCTAGAATAAACTTAATGTAACAGAGAACGCAATTAATGGGAATAGTCGGGGGTTGGTAATAAAACGTTTAGAAACTGTTTAATTAGATAATGTTCGATACTTGTATTATATAATAAATAGTATCTTAGTTCAAGCAc                                                                           <  2:287787/141‑1 (MQ=255)

                                                                   tGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCt                                                                         <  2:65131/141‑1 (MQ=255)

                                                                   ggCTAGAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCt                                                                         <  2:350992/140‑1 (MQ=255)

                                                                     cTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTaa                                                                       >  2:36531/1‑141 (MQ=255)

                                                                        taataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATc                                                                    >  2:201082/1‑141 (MQ=255)

                                                                          ataaAGTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCAt                                                                  <  2:236281/141‑1 (MQ=255)

                                                                          ataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCAt                                                                  <  1:226989/141‑1 (MQ=255)

                                                                          ataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCAt                                                                  <  2:199428/141‑1 (MQ=255)

                                                                            aaaCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTATTCCAAGCACCTAAATCATta                                                                >  2:159727/1‑141 (MQ=255)

                                                                            aaaCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATAATta                                                                >  2:195380/1‑141 (MQ=255)

                                                                               cTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATGATTTACGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATtaaat                                                             >  2:49802/1‑141 (MQ=255)

                                                                                ttAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATtaaata                                                            <  1:297406/141‑1 (MQ=255)

                                                                                 tAATATAACAAAAACCTCAACTACTGGTAATAGTCGGGGTTTTGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATtaaataa                                                           <  2:257480/141‑1 (MQ=255)

                                                                                  aaTATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATtaaataaa                                                          <  2:231305/141‑1 (MQ=255)

                                                                                   atatAACAAAAAGCCAAACGACTTGTAATAGTTGGGGTTTTGTAATAAAAATGTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTaaataaat                                                         <  2:134515/141‑1 (MQ=255)

                                                                                   atatAAAAAAAACCCCAACTACGTGTAATAGTCGGTGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGAAAGCACCTAAATCATTaaataaat                                                         <  2:74653/141‑1 (MQ=255)

                                                                                      taACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAAAGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAAtata                                                      >  2:415472/1‑141 (MQ=255)

                                                                                           aaaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCt                                                 <  1:289107/141‑1 (MQ=255)

                                                                                             aaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaa                                               >  2:253518/1‑141 (MQ=255)

                                                                                              aCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaa                                              >  1:281813/1‑141 (MQ=255)

                                                                                              aCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaa                                              >  1:261998/1‑141 (MQ=255)

                                                                                              aCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaa                                              >  1:258812/1‑141 (MQ=255)

                                                                                              aCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAACCtaaa                                              >  1:336665/1‑141 (MQ=255)

                                                                                                 ccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATACTGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaataa                                           >  1:215645/1‑141 (MQ=255)

                                                                                                 ccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaataa                                           <  1:395432/141‑1 (MQ=255)

                                                                                                   aaCTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATaaaa                                         >  1:428366/1‑141 (MQ=255)

                                                                                                    actactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATaaaaa                                        <  1:67320/141‑1 (MQ=255)

                                                                                                    actactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATaaaaa                                        >  1:377264/1‑141 (MQ=255)

                                                                                                    actactGGAAATAGCCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATaaaaa                                        >  2:376794/1‑141 (MQ=255)

                                                                                                     atattGGCAATAATCGGGGATTCGAAATAAAAAATTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATAATATAATAAATAATATCTTAGTGCAAGCACTTCAATTATTAAATAAATGTAAAGCTAAATAAAAAc                                       <  2:39645/137‑1 (MQ=255)

                                                                                                      tactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACg                                      <  2:363785/141‑1 (MQ=255)

                                                                                                        ctGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGtt                                    >  2:363949/1‑141 (MQ=255)

                                                                                                          ggTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTACATCAATGTAAATCTAAATAAAAACGtttt                                  >  2:257751/1‑141 (MQ=255)

                                                                                                           gTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAACCGTTtta                                 >  2:402174/1‑141 (MQ=255)

                                                                                                            tAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAACCGTTttat                                <  2:353206/141‑1 (MQ=255)

                                                                                                            tAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTttat                                <  1:153087/141‑1 (MQ=255)

                                                                                                              aTAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCATAGTACAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTttatta                              >  2:4559/1‑141 (MQ=255)

                                                                                                                 gTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACct                           >  1:306029/1‑141 (MQ=255)

                                                                                                                  tCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACctc                          <  2:230865/141‑1 (MQ=255)

                                                                                                                     gggTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTa                       >  1:77454/1‑141 (MQ=255)

                                                                                                                       gTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTTATGCTAAATAAAAACGTTTTATTACCTCTTAcc                     >  1:221755/1‑141 (MQ=255)

                                                                                                                          tGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCaac                  >  2:389966/1‑140 (MQ=255)

                                                                                                                          tGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAAGGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCaaa                  >  1:404928/1‑141 (MQ=255)

                                                                                                                           ggTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAAc                 >  2:382787/1‑141 (MQ=255)

                                                                                                                            gTAATAAAACGATAAGAAACTGTTTATTTATATAATTTACGACACTGGTATTATAGAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACt                <  1:142082/141‑1 (MQ=255)

                                                                                                                                  aaaCGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAata          <  1:302568/141‑1 (MQ=255)

                                                                                                                                     cGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTACAATATgg       >  1:94823/1‑141 (MQ=255)

                                                                                                                                     cGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATga       >  2:17230/1‑140 (MQ=255)

                                                                                                                                       tttAGAAACTGTTTATTTATATAATTTTCGATAATACTTAAAAGGAAATAATACTGTCTACGGCTGTTCACCCTAATCATTAAATAAATGTAAAGCTAAAGAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGaa     >  1:316705/1‑141 (MQ=255)

                                                                                                                                         tAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATGTGGAAag   <  2:269439/141‑1 (MQ=255)

                                                                                                                                         tAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAag   <  2:266997/141‑1 (MQ=255)

                                                                                                                                          aGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCCCCTGCCATAGGTGATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAaga  >  1:426162/1‑141 (MQ=255)

                                                                                                                                          aGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAaga  <  1:400519/141‑1 (MQ=255)

                                                                                                                                          aGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAaga  >  1:14356/1‑141 (MQ=255)

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGA  >  CP000731/1‑220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`