| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2476329 = | 30 (0.840) | 9 (0.260) | 5/268 | 2.6 | 23.5% | intergenic (‑74/+166) | tcaA/tcaR | Membrane‑associated protein TcaA/HTH‑type transcriptional regulator TcaR |
| ? | USA300TCH1516_ALE | = 2476325 | 30 (0.880) | intergenic (‑70/+170) | tcaA/tcaR | Membrane‑associated protein TcaA/HTH‑type transcriptional regulator TcaR | |||||
ATAAGACTAAATATGTATGTATTGAACACCTTCTTTTTAGTTATAATTGAGAGAGTACTTTCATAAATAATGTAATAAGGTACAATTCTAAAGTAAAGTTAATCATTTCTTGAATTGTATTCTTGGGATAATATTTGTAAAATAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2476474‑2476329‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aataatGGTAAAATAATGAAATAATTTTTGTGATATACATATAACAATTGAAGAGGAACAGAATTGAGGTGAAAGTATGAAATCTTGCCCGAAGTGCGGACAACAAGCACAAGATG < USA300TCH1516_ALE/2476325‑2476216 ATAAGACTAAATATGTATGTATTGAACACCTTCTTTTTAGTTATAATTGAGAGAGTACTTTCATAAATAATGTAATAAGGTACAATTCTAAAGTAAAGTTAATCATTTCTTGAATTGTATTCTTGGGATAATATTTGTAAA > 1:268943/1‑141 AAGACTAAATATGTATGTATTGAACACCTTCTTTTTAGTTATAATTGAGAGAGTACTTTCATAAATAATGTAATAAGGTACAATTCTAAAGTAAAGTTAATCATTTCTTGAATTGTATTCTTGGGATAATATTTGTAAAAT > 1:41870/1‑141 GTTATAATTGAGAGAGTACTTTCATAAATAATGTAATAAGGTACAATTCTAAAGTAAAGTTAATCATTTCTTGAATTGTATTCTTGGGATAATATTTGTAAAATAATGGTAAAATAATGAAATAATTTTTGTGATATACAT > 2:139945/1‑141 GTTATAATTGAGAGAGTACTTTCATAAATAATGTAATAAGGTACAATTCTAAAGTAAAGTTAATCATTTCTTGAATTGTATTCTTGGGATAATATTTGTAAAATAATGGTAAAATAATGAAATAATTTTTGTGATATACAT > 2:209052/1‑141 TAATGTAATAAGGTACAATTCTAAAGTAAAGTTAATCATTTCTTGAATTGTATTCTTGGGATAATATTTGTAAAATAATGGTAAAATAATGAAATAATTTTTGTGATATACATATAACAATTGAAGAGGAACAGAATTGAG < 1:399757/141‑1 TAATGTAATAAGGTACAATTCTAAAGTAAAGTTAATCATTTCTTGAATTGTATTCTTGGGATAATATTTGTAAAATAATGGTAAAATAATGAAATAATTTTTGTGATATACATATAACAATTGAAGAGGAACAGAATTGAG < 2:105178/141‑1 TCTTGAATTGTATTCTTGGGATAATATTTGTAAAATAATGGTAAAATAATGAAATAATTTTTGTGATATACATATAACAATTGAAGAGGAACAGAATTGAGGTGAAAGTATGAAATCTTGCCCGAAGTGCGGACAACAAGC < 1:139945/141‑1 TCTTGAATTGTATTCTTGGGATAATATTTGTAAAATAATGGTAAAATAATGAAATAATTTTTGTGATATACATATAACAATTGAAGAGGAACAGAATTGAGGTGAAAGTATGAAATCTTGCCCGAAGTGCGGACAACAAGC < 1:209052/141‑1 GAATTGTATTCTTGGGATAATATTTGTAAAATAATGGTAAAATAATGAAATAATTTTTGTGATATACATATAACAATTGAAGAGGAACAGAATTGAGGTGAAAGTATGAAATCTTGCCCGAAGTGCGGACAACAAGCACAA > 1:24695/1‑141 GAATTGTATTCTTGGGATAATATTTGTAAAATAATGGTAAAATAATGAAATAATTTTTGTGATATACATATAACAATTGAAGAGGAACAGAATTGAGGTGAAAGTATGAAATCTTGCCCGAAGTGCGGACAACAAGCACAA > 2:72874/1‑141 TGTATTCTTGGGATAATATTTGTAAAATAATGGTAAAATAATGAAATAATTTTTGTGATATACATATAACAATTGAAGAGGAACAGAATTGAGGTGAAAGTATGAAATCTTGCCCGAAGTGCGGACAACAAGCACAAGATG < 1:2580/141‑1 ATAAGACTAAATATGTATGTATTGAACACCTTCTTTTTAGTTATAATTGAGAGAGTACTTTCATAAATAATGTAATAAGGTACAATTCTAAAGTAAAGTTAATCATTTCTTGAATTGTATTCTTGGGATAATATTTGTAAAATAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2476474‑2476329‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aataatGGTAAAATAATGAAATAATTTTTGTGATATACATATAACAATTGAAGAGGAACAGAATTGAGGTGAAAGTATGAAATCTTGCCCGAAGTGCGGACAACAAGCACAAGATG < USA300TCH1516_ALE/2476325‑2476216 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |