| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2278955 = | 38 (1.060) | 4 (0.150) +CCCAGTTGCAAACAATAAAGCTAAAGATATGCAA |
3/212 | 2.8 | 11.8% | coding (3578/3882 nt) | ebh_3 | Extracellular matrix‑binding protein ebh |
| ? | USA300TCH1516_ALE | = 2278980 | 41 (1.150) | coding (3553/3882 nt) | ebh_3 | Extracellular matrix‑binding protein ebh | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGTCTTAGCTTGGTGGTCGTCAGTGTTAGTTACATTAAGCATATCTTGATTAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTC > USA300TCH1516_ALE/2278821‑2279071 | ttGTCTTAGCTTGGTGGTCGTCAGTGTTAGTTACATTAAGCATATCTTGATTAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTg > 2:346542/1‑141 (MQ=255) tAGCTTGGTGGTCGTCAGTGTTAGTTACATTAAGCATATCTTGATTAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGAttttt < 2:256440/141‑1 (MQ=255) tAGCTTGGTGGTCGTCAGTGTTAGTTACATTAAGCATATCTTGATTAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGAttttt < 2:229214/141‑1 (MQ=255) cTTGGTGGTCGTCAGTGTTAGTTACATTAAGCATATCTTGATTAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCg < 1:98015/141‑1 (MQ=255) cTTGGTGGTCGTCAGTGTTAGTTACATTAAGCATATCTTGATTAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCg < 1:196279/141‑1 (MQ=255) cTTGGTGGTCGTCAGTGTTAGTTACATTAAGCATATCTTGATTAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCg < 2:17693/141‑1 (MQ=255) gtcgtcAGTGTTAGTTACATTAAGCATATCTTGATTAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCAtt > 2:280737/1‑141 (MQ=255) tcgtcAGTGTTAGTTACATTAAGCATATCTTGATTAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTa > 1:302171/1‑141 (MQ=255) acgtcAGTGTTAGTTACATTAAGCATATCTTGATTAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTa > 1:394044/2‑141 (MQ=255) atgcattggcaccgtcgttttgcgtagctttattgtttgcagctgaaccaactgatttttgcgtatcattagtttgcatatctttagctttattgtttgcaactgggCCAACTGATTTTTGCGTATCATTAGTATctgctg < 1:193641‑M1/34‑1 (MQ=255) tAAGCATATCTTGATCAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTat < 1:232151/141‑1 (MQ=255) gCATATCTTGATTAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTatcat > 2:404521/1‑141 (MQ=255) gtcgttttgcgtagctttattgtttgcagctgaaccaactgatttttgcgtatcattagtttgcatatctttagctttattgtttgcaactgggCCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTatcatc < 1:147583‑M1/47‑1 (MQ=255) gtcgttttgcgtagctttattgtttgcagctgaaccaactgatttttgcgtatcattagtttgcatatctttagctttattgtttgcaactgggCCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTatcatc < 1:282755‑M1/47‑1 (MQ=255) tAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTaa < 1:140838/141‑1 (MQ=255) tAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTaa < 1:331568/141‑1 (MQ=255) tAGCACTATTGCTTCCATTTGAAACGGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATTATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTaa < 1:88984/141‑1 (MQ=255) cACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACAt < 1:249482/141‑1 (MQ=255) aCTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACAtt > 1:82504/1‑141 (MQ=255) aTTGCTTCCATTTGAAACTGTAGCTGGAGCTGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGt < 1:26297/141‑1 (MQ=255) aTTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGt < 1:402860/141‑1 (MQ=255) tGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTg < 1:171892/141‑1 (MQ=255) tGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTg < 1:398274/141‑1 (MQ=255) cATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCa > 1:311470/1‑141 (MQ=255) cATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCa > 1:161301/1‑141 (MQ=255) aTTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCAt < 1:94516/141‑1 (MQ=255) aTTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCAt < 1:232715/141‑1 (MQ=255) aTTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCAt < 1:35130/141‑1 (MQ=255) aTTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCAt < 1:373968/141‑1 (MQ=255) aaCTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGGTTTTTGCGTATCATTATTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTc < 1:143603/141‑1 (MQ=255) cTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCtt > 1:284669/1‑141 (MQ=255) agaTGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCaga > 1:291827/1‑141 (MQ=255) agaTGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCaga > 2:229892/1‑141 (MQ=255) agaTGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCaga > 2:93661/1‑141 (MQ=255) aTGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTttgcatatctttagctttattgtttgcaactgggccaactgatttttgcgtatcattagtatctgctg < 1:193641‑M2/141‑69 (MQ=255) cgtatcattagtttgcatatctttagctttattgtttgcaactgggCCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTATCTTTTGCTTCagaaga > 2:193641‑M1/47‑141 (MQ=255) cATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATg > 1:27744/1‑141 (MQ=255) cATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATg > 1:225974/1‑141 (MQ=255) gtcgtTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTttgcatatctttagctttattgtttgcaactgggccaactgatttttgcgtatcattagtatctgctgttgccgtatcatc < 1:282755‑M2/141‑82 (MQ=255) gtcgtTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTttgcatatctttagctttattgtttgcaactgggccaactgatttttgcgtatcattagtatctgctgttgccgtatcatc < 1:147583‑M2/141‑82 (MQ=255) gtcgtTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGa > 1:47340/1‑141 (MQ=255) gtcgtTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGa > 1:203644/1‑141 (MQ=255) tttGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGtt < 1:389164/141‑1 (MQ=255) gTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTc < 1:194780/141‑1 (MQ=255) gTAGCTTTATTGTTTGAAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTCCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTc < 1:322502/141‑1 (MQ=255) | TTGTCTTAGCTTGGTGGTCGTCAGTGTTAGTTACATTAAGCATATCTTGATTAGCACTATTGCTTCCATTTGAAACTGTAGCTGGAGATGCATTGGCACCGTCGTTTTGCGTAGCTTTATTGTTTGCAGCTGAACCAACTGATTTTTGCGTATCATTAGTATCTGCTGTTGCCGTATCATCTTTTTGGCTAACATTAGTTGAAGTCATTTTTTCTTTTGCTTCAGAAGATGCAGATGTTGATGGTTTATTC > USA300TCH1516_ALE/2278821‑2279071 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |