| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012417 | 987 = | 3332 (1.130) | 54 (0.020) | 28/244 | 10.1 | 1.8% | pseudogene (708/709 nt) | USA300HOU_RS14890 | replication protein |
| ? | NC_012417 | 1013 = | 2873 (1.060) | coding (182/192 nt) | USA300HOU_RS15665 | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 413 total aligned reads displayed.
TCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012417/1137‑987‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATA > NC_012417/1013‑1152 aATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGAATTAAAAACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACAC < 2:558977/140‑1 CATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACAC < 1:348025/141‑1 CATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACAC < 1:186919/141‑1 CATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACAC < 4:21438/141‑1 CATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATAAACAAAAAAGACATTAGTCAACAC < 2:447684/141‑1 ATACAAAGCTGTATTGTATTATTTTTGTTACATAATATATTGAGTTTGTATTATTTTTGTAACAATATATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACT < 4:302979/141‑1 ATACAAAGATGTAATGTCTTATTTTTGTAAAAAAATATATTAAGTTTGTCTTATGTTTGTGACACTACATAAAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAAAAAAAAAAAAAGACATTAGTCAACACT < 2:23211/141‑1 TACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTA < 1:196795/141‑1 TACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTA > 4:134460/1‑141 TACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTA < 1:234112/141‑1 ACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAA > 1:373814/1‑141 ACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAA > 3:13652/1‑141 ACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAA < 2:149003/141‑1 ACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAA < 3:125370/141‑1 ACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAAAAAACAAAAAAGACATTAGCCAACACTAA < 2:208349/141‑1 ACAAAGCTGCACTGTCTTAGTTTTGTGACAAAATATATTGCGTTTGCCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAA < 1:133063/141‑1 CAAAGCTGTACTGTCTTATTTTTGTGACACCAAATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAAT < 1:50011/141‑1 AAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATG > 3:226350/1‑141 AAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATG > 3:66158/1‑141 AAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGT > 1:171442/1‑141 AGCTGTACTGTCTTATTTTTGTGACATAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTC > 4:103062/1‑141 AGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTC < 2:750486/141‑1 AGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTC > 1:531403/1‑141 AGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTC > 1:120634/1‑141 AGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTC > 1:91601/1‑141 AGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTC > 1:156011/1‑141 AGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACAC < 1:322713/134‑1 aaTGTACTGTCTTATTTTTGTGAAACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAAAAAAAAAAAAAGACATTAGTCAACACTAATGTCT < 2:357425/139‑1 GCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCT > 1:470197/1‑141 GCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCT > 3:305699/1‑141 GCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCT < 1:311557/141‑1 GCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCT > 3:51948/1‑141 GCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCT > 2:178074/1‑141 GCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCT > 2:128931/1‑141 CTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACACAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTT > 1:415464/1‑141 CTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTT > 2:78978/1‑141 CTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTT > 3:340198/1‑141 CTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTT > 2:342908/1‑141 CTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTT > 1:613881/1‑141 CTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTT > 1:271301/1‑141 ACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAA < 3:25067/112‑1 AATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACT < 3:11238/108‑1 TGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTA < 3:109653/85‑1 TGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTA > 4:109661/1‑85 TACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGT < 2:421976/81‑1 ATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACAC < 1:440975/65‑1 ATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACA > 3:278839/1‑64 AGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACT > 3:195635/1‑50 AGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACAC > 1:552381/1‑49 AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACA < 1:151664/139‑1 ATCAACAAAAAAGACATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAA > 3:548/1‑141 CAACAAAAAAGACATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAAAAAGA > 2:771594/1‑141 AAGACATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAG > 4:267157/1‑141 ACATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACGGCTT > 3:286401/1‑141 ACATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTT < 4:281498/141‑1 ACATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGCCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAA > 4:60874/1‑124 CATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTT > 2:732287/1‑141 TTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACATAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGT > 2:682924/1‑141 TAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCGCAAAAATAAGAAAGTACAGCTTTGTA > 2:628588/1‑141 AGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTAT > 1:633177/1‑141 ACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATA > 2:579261/1‑99 CTAATGTCTTTTTTGTNGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGCGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAC > 1:734990/1‑141 TAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACGGCTTTGTATGATATCACT < 4:286401/141‑1 TAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACT < 2:508442/141‑1 TAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACT < 1:490366/141‑1 TAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACT < 1:697534/141‑1 TAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAAAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACT < 2:287536/141‑1 TAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTACTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACT < 4:323458/141‑1 AATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTT > 3:154444/1‑141 AATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTT < 3:262909/141‑1 AATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAA > 1:287533/1‑108 ATGTCTTTTTTTTTTTTTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAATACAGTACAGCTTTGTATGATATCACTTT > 2:193901/1‑141 ATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTT > 1:571330/1‑141 ATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTT > 2:484914/1‑141 ATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGC > 1:648157/1‑123 ATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAG > 1:203216/1‑122 ATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACA > 2:67070/1‑105 ATGTCTTTTTTGATGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTT < 2:547768/141‑1 TGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTTTTTTTTTTGTTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACATTACAGCTTTGTATGATATCACTTTt > 2:313277/1‑140 TGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTTACATATTCTGTATGTATTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACATTAATAAGACATTACAGATTTGTATAATATCACTTTA > 4:163015/1‑141 TGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTA < 1:425036/141‑1 TGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTA < 1:215345/141‑1 TGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCT < 1:354353/38‑1 GTCTTTTTTTTTTTTTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAATACAGTACAGCTTTGTATGATATCACTTTAA > 2:705202/1‑141 GTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAA > 1:683719/1‑141 GTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAA > 1:641796/1‑141 GTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCT < 1:478644/122‑1 GTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAACGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAA < 1:74597/141‑1 TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAA < 1:720272/141‑1 TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAA > 2:495690/1‑141 CTTTTTTTTTTTTTTTTTATAAAAAAGTACTGTCTTATTTTTGTGTCAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACTCAATATATTGTTTTTCAATAATAATTTAATACAGCTTTTTATGATATCACTTTAAAA > 4:273572/1‑141 CTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAA < 4:249022/141‑1 CTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAA > 1:102180/1‑141 CTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAA < 2:403991/141‑1 CTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTT > 2:199774/1‑137 CTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAAT > 1:26516/1‑74 CTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAAT < 2:26516/74‑1 TTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAAT > 2:66157/1‑141 TTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATA < 3:86940/141‑1 TTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATAGATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATA < 1:405943/141‑1 TCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012417/1137‑987‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATA > NC_012417/1013‑1152 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |