| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 2372 | 65 (0.950) | 5 (0.010) | 4/262 | 9.5 | 1.5% | intergenic (+152/+16) | USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | = 1946 | 614 (1.020) | intergenic (+179/+147) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000731/2228‑2372‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaataaaTTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAAACAGTGTG < NC_012417/1946‑1808 CGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGGATGTCGGCATAGCGTGAGCTATTAATCCGACCATTCGACAAGTATTGGGATATTTAAGGGTTACGAGGCTCAACGTCA > 1:16416/1‑140CGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCA > 1:37247/1‑140 TATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTGTTGGGATTGTTAAGGGTTCAGAGGCTCAAAGTAAAT > 1:152963/1‑140 gTTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTTGGGATAGCGTGAGCTATTAAGCCGACCATTGGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATA < 1:102435/139‑1 ATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCGTTAACTAAACTTGCAGACGCATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTCTGGGCTTGTTAAGAGTTGCGCGGCTCAACGTCAATc > 1:178026/1‑139 ATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGCATGTCGGTATAGCGTGCGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATA < 2:174971/140‑1 tgTATGACGAAATAATTTAGTGATGGTGAGAAGAACCGTTAACTAAGCTGGCAGACGCATGTCGGCATAGCGTGAGATATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAA < 2:166297/138‑1 tcTATGCAGAAAAAATTGATTCATGTTGAGAAGAACCCTTAAATAAACTTGCAGACGAATGTCGGCATAGCGTGTGCTATTAAGCCGCCCATTCTACAATTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAA < 2:166567/138‑1 TTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAA < 1:238478/140‑1 TTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAA < 2:149613/140‑1 TTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAA < 1:101229/140‑1 gcGCCAAAACAATTTATTAGTGTGGAGAAGCACCCTTAACTAAACTTGCGGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACCAGTTCTGGGATTGTTAAGGGTTCCCAGGCACAACGTCAATAAcgc < 2:132461/138‑4 TTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAATTTTCTCGGCATAAATGC > 1:257908/1‑140 TTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGACGCTCACAGTCAATAAATTTTCTCGGCATCAATGC > 2:41867/1‑140 GAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTC‑‑‑TTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTAGTCTATTT > 1:169958/1‑140 GAAAAACCCTTAACTAATCTTGCAGACGAATGTCGGCATAGCGGGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAATTTTCTCGGCATAAATGCGTCGTCTATT < 2:217030/140‑1 AACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTT > 2:143287/1‑140 caatataAATAAATTTGCTCGGCATGAATGTGTCGTCTATTTTTTATTATCTGCATGATAATCATATTTTTCGGCCAAGTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAA < 2:192782/133‑1 attAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAA < 1:143458/137‑1 gtAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTTCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAATCAACAACACTAATATAAATAAAAAAA > 2:181093/3‑140 TCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTTTTTTTTTTTGTTTAAAGCATTATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATATGAATATAAAAA > 2:213629/1‑140 TCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAACCAAAAAGTAAGCAACAACAACAATAACATTAAAAAAA > 2:72530/1‑140 TCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACACAAAGTAAGCAACAACACCAATAAGAATAAAAAAA > 2:71986/1‑140 TCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCATTAGGAATAAAAAAA > 2:170614/1‑140 TCAATAAAGTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGGCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAAA < 2:219864/140‑1 AATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCATAAGCATCATCTTTATATAAAAAACACAAGTAATCAACAAAACCAATAGAAATAAAACAACA > 2:210633/1‑140 AATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTATGCAACAACACTAATAGAAATAAAATAACA > 2:27636/1‑140 AATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAAACA < 2:112715/140‑1 AATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGCAATAAAAAAACA > 1:240612/1‑140 ATAAATTTTCTCGGCATAGATGCGTCGTCTATTTTTTATTATCATCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAAACAG < 1:158886/140‑1 ATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAATTAAGCAACAACACCAATAGGAATAAAAAAACAG > 1:173403/1‑140 ATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCACTAGGAATAAAAAAACAG > 1:141609/1‑140 ATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAAACAG < 1:107650/140‑1 ATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAAACAG > 2:167751/1‑140 ATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAAACAG < 1:179721/140‑1 ATAAATTTTCTCGGCATAAATGCGTCATCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCCTCTTTATAGAAACACAAAAAGTAAGCAACAACACCACTAGAAATAAAAAAACAG > 2:135549/1‑140 AAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCTATCTCGTCAAAAGCATCTTCTTTATATACAAACAAAAAGTATGCAACAACACCAATAGGAATAAAAAAACAatt > 2:120526/1‑137 AAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCTTCTCGTCAAATGCATCATCTTTATAGTAAAACAAAAAGTAAGCAACAACACTAATCGGAATAAAAAAACAGTG > 1:14105/1‑140 AAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGTAATAAAAAAACAGTG > 1:19755/1‑140 AAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAAACAGTG < 2:98407/140‑1 AAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAAACAGTG > 1:176377/1‑140 AAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTACTTACATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCACTAGGAATAAAAAAACAGTG < 2:258152/140‑1 AATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATTTTCATGATAATCGTATTTTTCTTCCATCTCGTCAAAAGCATTATCTTTATCTAAATATAAAAAGTAAGCAATAACACCAATAGGAATAAAAAAACATTGT > 1:55310/1‑140 AATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATCAGAATAAAAAAACAGTGT > 1:118556/1‑140 AATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAAACAGTGT < 1:244451/140‑1 AATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAAACAGTGT < 1:143287/140‑1 AATTTTCTCATCATAAATGCGTAGGATATTTGTTATAATCTTTATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCCTCTTTATAGAAAAATAAAAAGTAAGCAACAACACCAATAGGAAAAAAAAAACAGTGT < 2:231062/140‑1 ATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGCTTCCGATATTTTTCTTCCCTATCGTCAATAGCATCATCTTTATAGAAAAACATAAAGTAAGCAACAACACCAAGAGGAATAAAAAAACAGTGTG < 1:165228/140‑1 ATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAAACAGTGTG < 1:255537/140‑1 ATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAAACAGTGTG < 1:253651/140‑1 ATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAAACAGTGTG < 1:100578/140‑1 ATTTTCTCGGCATAAATGCGTCGTATATTTTTTATTATCTTCATGATAATAATATTTATCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAAACAGTGTG < 2:72962/140‑1 CGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000731/2228‑2372‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaataaaTTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAACACCAATAGGAATAAAAAAACAGTGTG < NC_012417/1946‑1808 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |