| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2085296 = | 18 (0.640) | 6 (0.240) | 6/232 | NT | 26.6% | coding (173/201 nt) | hlb_1 | Phospholipase C |
| ? | USA300TCH1516_ALE | = 2128343 | 17 (0.680) | coding (1/825 nt) | hlb_2 | Phospholipase C | |||||
CTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAT‑TTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGAA > USA300TCH1516_ALE/2128204‑2128483 | cTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAt < 2:174798‑M2/141‑2 (MQ=255) cATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgta < 2:220606‑M2/141‑5 (MQ=255) ccGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGGCCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatcc > 1:271076‑M2/1‑134 (MQ=255) tcATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTggggg < 1:224964/141‑1 (MQ=255) ttGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAat > 2:257856/1‑141 (MQ=255) gTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAatat > 1:38719/1‑141 (MQ=255) agaagaAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagactactaaca < 2:62647‑M2/141‑27 (MQ=255) agaagaAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATaaa > 1:242884/1‑141 (MQ=255) aaaaTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCAAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaat < 1:197336‑M2/141‑33 (MQ=255) aTGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatc > 2:888‑M2/1‑101 (MQ=255) acaacTAAAATTTTAGAAAGTATGTCATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAT‑TTAATCAGACCATATTCTtata > 2:198747/1‑141 (MQ=255) acaacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAT‑TTAATCGGACAATCTTCTtata > 1:228952/1‑141 (MQ=255) aaaacaaaaTGTTAGAAAGTATGTAATTTAGGTACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTTGGGGCAATATAATCGCGCTGAT‑TTAATCGGACAATCTTCTTatat < 1:20418/136‑1 (MQ=255) aaTTTTAGAAAGGATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataata > 1:302173‑M2/1‑76 (MQ=255) tAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAT‑TTAATCGGACAATCTTCTTATCTTAAAAATAatga > 1:77790/1‑141 (MQ=255) aGAAAGGATGTGATTGAGGGACACATTGGGGACTCCAAACCCAATAAATACTGTTATTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAT‑TTAATCGGACAATCTTCTTATATTAAAAATAatgat < 2:224382/141‑1 (MQ=255) gTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAT‑TTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGt < 1:187684/141‑1 (MQ=255) atATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGTGCTGAT‑TTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGt < 1:220606/140‑1 (MQ=255) tGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataac > 1:260619‑M2/1‑62 (MQ=255) gTAATTTAGGGCCCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAT‑TTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAata < 1:257856/141‑1 (MQ=255) tCCAAACCCAATAAATACTGTTGTTACAAAGTTTCTATGTATCCAAACTGGGGGCAATATAAAAGCGCTGAT‑TTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGAATTTAATAAAGGt > 2:253663/1‑141 (MQ=255) aaaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAA‑ACGGTCATGGGAAGCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCa < 1:161932/141‑1 (MQ=255) aaCCCAATAAATACTGTTGTTACAAGGTCTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAT‑TTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCAt > 2:186245/1‑141 (MQ=255) gttACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAT‑TTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTa < 2:77790/141‑1 (MQ=255) ttACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactt > 2:197336‑M2/1‑14 (MQ=255) tACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAT‑TTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAAt > 2:183240/1‑141 (MQ=255) aGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAT‑TTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAAGATTCAATCAAGCATTTGATAATGGTGCATCAGCCAAATTATTAATTCATGTGa > 2:207154/1‑141 (MQ=255) aTGTATCCAAACTGGGGGCAATATAAACGCGCTGAT‑TTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGaa < 1:186245/141‑1 (MQ=255) | CTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAT‑TTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGAA > USA300TCH1516_ALE/2128204‑2128483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |