| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2460492 = | 130 (1.540) | 5 (0.060) | 3/246 | NT | 3.9% | coding (783/900 nt) | natA_2 | ABC transporter ATP‑binding protein NatA |
| ? | USA300TCH1516_ALE | 2460521 = | 123 (1.540) | coding (754/900 nt) | natA_2 | ABC transporter ATP‑binding protein NatA | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATCAATCATGTACGTGCATCTAATGGTAACAAGAAAGTTGTCATTGAATCAGAAACAACACTACCAGATTTAACAAACATTAGAGGCATCATTCATAGTGAAAACATGAAGCAAGGTCTTCAGTTGACGATTGAGAA‑TGAAGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2460636‑2460492‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaagacCTTGCTTCATGTTTTCACTATGAATGATGCCTCTAATGTTTGTTAAATCTGGTAGTGTTGTTTCTGATTCAATGACAACTTTCTTGTTACCATTAGATGCACGTACATGATTGATATCACCAGAAACAACAAGTTGAC > USA300TCH1516_ALE/2460521‑2460658 TATCAATCATGTACGTGCATCTAATGGTAACAAGAAAGTTGTCATTGAATCAGAAACAACACTACCAGATTTAACAAACATTAGAGGCATCATTCATAGTGAAAACATGAAGCAAGGTCTTCAGTTGACGATTGAGAA‑TGA < 1:248216/141‑1 AATCATGTACGTGCATCTAATGGTAACAAGAAAGTTGTCATTGAATCAGAAACAACACTACCAGATTTAACAAACATTAGAGGCATCATTCATAGTGAAAACATGAAGCAAGGTCTTCAGTTGACGATTGAGAA‑TGAAGAC < 2:798752/141‑1 ataTACGTGCATCTAATGGTAACAAGAAAGTTGTCATTGAATCAGAAACAAAACTACCAGATTTAACAAACATTAGAGGCATCATTGATATTGAAAACATGAAGCAAGGTTTTCAGTTCACCAATAATAC‑TGAAGACCTag > 2:621729/4‑139 CATCTAATGGTAACAAGAAAGTTGTCATTGAATCAGAAACAACACTACCAGATTTAACAAACATTAGAGGCATCATTCATAGTGAAAACATGAAGCAAGGTCTTCAGTTGACGATTGAGAA‑TGAAGACCTTGCTTCATGTT > 1:771254/1‑141 CATCTAATGGTAACAAGAAAGTTGTCATTGAATCAGAAACAACACTACCAGATTTAACAAACATTAGAGGCATCATTCATAGTGAAAACATGAAGCAAGGTCTTCA‑TTCTCAATCGTCAACTGAAGACCTTGCTTCATGTT > 2:640408/1‑141 CATCTAATGGTAACAAGAAAGTTGTCATTGAATCAGAAACAACACTACCAGATTTAACAAACATTAGAGGCATCATTCATAGTGAAAACATGAAGCAAGGTCTTCA‑TTCTCAATCGTCAACTGAAGACCTTGCTTCATGTT > 2:771254/1‑141 CATCTAATGGTAACAAGAAAGTTGTCATTGAATCAGAAACAACACTACCAGATTTAACAAACATTAGAGGCATCATTCATAGTGAAAACATGAAGAAAGGTCTACAGTTGACGATTGAGAA‑TGAAAACCTTGCTTCATGTT > 1:640408/1‑141 TAACAAACATTAGAGGCATCATTCATAGTGAAAACATGAAGCAAGGTCTTCA‑TTCTCAATCGTCAACTGAAGACCTTGCTTCATGTTTTCACTATGAATGATGCCTCTAATGTTTCTTCAATCTGGTAGTGTTGTTTCTGt > 2:851889/1‑140 TGAAGACCTTGCTTCATGTTTTCACTATGAATGATGCCTCTAATGTTTGTTAAATCTGGTAGTGTTGTTTCTGATTCAATGACAACTTTCTTGTTACCATTAGATGCACGTACATGATTGATATCACCAGAAACAACAAGT < 2:992425/141‑1 acGACCTTGCTTTATGTTTTCACTATGAATGATGCCTCTAATGTTTGTTAAATCTGGTAGTGTTGTTTCTTATTTAATTACAACTTTCTTGTTACCATTAGATGCACGTACATGATTGATATCACCAGAAACAACAAGTTG < 1:974639/139‑1 AAGACCTTGCTTCATGTTTTCACTATGAATGATGCCTCTAATGTTTGTTAAATCTGGTAGTGTTGTTTCTGATTCAATGACAACTTTCTTGTTACCATTAGATGCACGTACATGATTGATATCACCAGAAACAACAAGTTG < 1:51213/141‑1 cGACCTTGCTTCATGTTTTCACTATGACTGATGCCTCTAATGTTTGTTAAATCTGGTAGTGTTGTTTCTGATTCAATGACAACTTTCTTGTTACCATTAGATCCACGTCCATGATTGATATCACCAAAAACCACAACTTGA > 2:266735/2‑141 AGACCTTGCTTCATGAATTCACTATGAATGATGACTCTAATGTTTGTTAAATCTGGTAGTGTTGTTTCTGATTCAATGACAACTTTCTTGTTACAATTATATGCACGTACATGATTGATATCATCAGAAACAACAAGTTGA > 2:138560/1‑141 AGACCTTGATTCATGTTTTCACTATGAATGATGCCTCTAATGTTTGTTAAATCTGGTAGTGTTGTTTCTGATTCAATAACAACTTTCTTGTTACCATTAGATGCAGGTACATGATTGCTATCACAATAAACAACAActcga > 2:656301/1‑136 GACCTTGCTTCATGTTTTCACTATGAATGATGCCTCTAATGTTTGTTAAATCTGGTAGTGTTGTTTCTGATTCAATGACAACTTTCTTGTTACCATTAGATGCACGTACATGATTGATATCACCAGAAACAACAAGTTGAC > 1:820779/1‑141 TATCAATCATGTACGTGCATCTAATGGTAACAAGAAAGTTGTCATTGAATCAGAAACAACACTACCAGATTTAACAAACATTAGAGGCATCATTCATAGTGAAAACATGAAGCAAGGTCTTCAGTTGACGATTGAGAA‑TGAAGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2460636‑2460492‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaagacCTTGCTTCATGTTTTCACTATGAATGATGCCTCTAATGTTTGTTAAATCTGGTAGTGTTGTTTCTGATTCAATGACAACTTTCTTGTTACCATTAGATGCACGTACATGATTGATATCACCAGAAACAACAAGTTGAC > USA300TCH1516_ALE/2460521‑2460658 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |