Predicted mutation
evidence seq id position mutation freq annotation gene description
JC USA300TCH1516_ALE 62,817 +TCAATT 100% intergenic (‑284/+229) USA300TCH1516_00053 ← / ← speG hypothetical protein/Spermidine N(1)‑acetyltransferase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 628170 (0.000)59 (0.730)
+TCAATT
46/246 NT 100% intergenic (‑284/+229) USA300TCH1516_00053/speG hypothetical protein/Spermidine N(1)‑acetyltransferase
?USA300TCH1516_ALE 62818 = 0 (0.000)intergenic (‑285/+228) USA300TCH1516_00053/speG hypothetical protein/Spermidine N(1)‑acetyltransferase

AAAAATAGAATTATTAAAACAACGCAAACAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCGTTGTTACAGCGTCATCATTCATAAAATCCTCGTAGATTTTATCAAGAATTTATTCCTCTTA  >  USA300TCH1516_ALE/62678‑62957
                                                                                                                                           |                                                                                                                                            
aaaaaTAGAATTATTAAAACAACGCAAACAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCt                                                                                                                                             <  1:118590‑M1/141‑2 (MQ=255)
      aGAATTATTAAAGCAACGCAAAGAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaattt                                                                                                                                       <  1:427146‑M1/141‑8 (MQ=255)
      aGAATTATTAAAACAACGCAAACAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaattt                                                                                                                                       <  1:65018‑M1/141‑8 (MQ=255)
      aGAATTATTAAAACAACGCAAACAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaattt                                                                                                                                       <  1:368866‑M1/141‑8 (MQ=255)
      aGAACTATGAAAACAACGCAAACAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaattt                                                                                                                                       <  1:349018‑M1/141‑8 (MQ=255)
        aaTTATTAAAACAACGCAAACAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttat                                                                                                                                     <  2:978530‑M1/141‑10 (MQ=255)
          ttattaAAACAACGCAAACAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttattt                                                                                                                                   <  2:663538‑M1/141‑12 (MQ=255)
           tattaAAACAACGCAAACAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttt                                                                                                                                  >  1:540351‑M1/1‑129 (MQ=255)
           tattaAAACAACGCAAACAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttt                                                                                                                                  <  2:803434‑M1/141‑13 (MQ=255)
           tattaAAACAACGCAAACAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttt                                                                                                                                  >  1:976190‑M1/1‑129 (MQ=255)
             ttaAAACAACGCAAACAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcactttatttttt                                                                                                                                >  2:496164‑M1/1‑127 (MQ=255)
             ttaAAACAACGCAAACAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttg                                                                                                                                >  1:583257‑M1/1‑127 (MQ=255)
             ttaAAACAACGCAAACAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttg                                                                                                                                >  1:265997‑M1/1‑127 (MQ=255)
              taAAACAACGCAAACAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgt                                                                                                                               >  2:525792‑M1/1‑126 (MQ=255)
                 aacaacGCAAACAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttga                                                                                                                            >  1:380429‑M1/1‑123 (MQ=255)
                          aaCAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatat                                                                                                                   >  2:847083‑M1/1‑114 (MQ=255)
                            cAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataa                                                                                                                 >  1:411963‑M1/1‑112 (MQ=255)
                            cAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataa                                                                                                                 >  1:641484‑M1/1‑112 (MQ=255)
                             aaGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataag                                                                                                                >  2:148666‑M1/1‑111 (MQ=255)
                                      tacAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattct                                                                                                       >  1:883001‑M1/1‑102 (MQ=255)
                                      tacAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaagtaatataagcttcattct                                                                                                       <  2:844418‑M1/141‑40 (MQ=255)
                                            aaaTGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgataga                                                                                                 <  1:350‑M1/141‑46 (MQ=255)
                                              aTGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagata                                                                                               >  2:838045‑M1/1‑94 (MQ=255)
                                                 tttGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgtgtaaattaatataagcgcccttagaatagatagtc                                                                                            >  2:757006‑M1/1‑91 (MQ=255)
                                                    gtgtAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcatt                                                                                         <  1:759782‑M1/141‑54 (MQ=255)
                                                    gtgtAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcatt                                                                                         >  1:1027461‑M1/1‑88 (MQ=255)
                                                     tgtAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGTATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcatta                                                                                        <  2:567226‑M1/141‑55 (MQ=255)
                                                      gtAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaa                                                                                       <  1:646820‑M1/141‑56 (MQ=255)
                                                       tAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAATGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaat                                                                                      <  1:70626‑M1/141‑57 (MQ=255)
                                                       tAATTCTGACAACGTCCTATTATGGTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaat                                                                                      <  1:633966‑M1/141‑57 (MQ=255)
                                                              gATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtt                                                                               >  2:1004905‑M1/1‑78 (MQ=255)
                                                               aTAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgttt                                                                              <  1:405138‑M1/141‑65 (MQ=255)
                                                                  aCGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgca                                                                           <  1:270781‑M1/141‑68 (MQ=255)
                                                                  aCGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgca                                                                           <  1:503898‑M1/141‑68 (MQ=255)
                                                                  aCGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgaa                                                                           >  1:796043‑M1/1‑74 (MQ=255)
                                                                     tCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaat                                                                        <  1:1022756‑M1/141‑71 (MQ=255)
                                                                      ccTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTATCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatatatagtcattaataattgtttgcaaatc                                                                       >  2:347486‑M1/1‑70 (MQ=255)
                                                                       cTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcg                                                                      >  1:554547‑M1/1‑69 (MQ=255)
                                                                             tGTTAATTGAAAATAGACAAAAATAAATTGAGAGCCTCCCTTACCGCAAAGTGAAGGATGCTCtaaatttatttctgttgaaattaatataagcttcattctgatagatagtcattaatcattgtttgcaaatcgctatta                                                                >  2:158910‑M1/1‑63 (MQ=255)
                                                                              gTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaa                                                               >  1:125798‑M1/1‑62 (MQ=255)
                                                                                 aaTTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttattgttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaattgttattaagta                                                            >  2:66662‑M1/1‑59 (MQ=255)
                                                                                 aaTTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGAATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagta                                                            >  2:66474‑M1/1‑59 (MQ=255)
                                                                                  aTTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtac                                                           >  1:646708‑M1/1‑58 (MQ=255)
                                                                                   ttGAAAATAGACAAAAATAAATTGAGAGCATCCGTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtacc                                                          <  2:543467‑M1/141‑85 (MQ=255)
                                                                                   aagaaAGTGGAGAAAAATAGATTGAGAGTAGCTGTTAGCGCAAAGTGAAGGATTTTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtacc                                                          <  2:715499‑M1/139‑85 (MQ=255)
                                                                                       aaaTAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttg                                                      >  1:330519‑M1/1‑53 (MQ=255)
                                                                                        aaTAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgt                                                     <  2:435028‑M1/141‑90 (MQ=255)
                                                                                        aaTAGACAAAAATAAACTGAGAGCAACCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgt                                                     <  1:121259‑M1/141‑90 (MQ=255)
                                                                                           aGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttac                                                  >  1:520695‑M1/1‑49 (MQ=255)
                                                                                            gACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagctgtatacagatcggtattcattaataattgtttgcaaatcgttattaagtaccgttgttaca                                                 <  1:443340‑M1/141‑94 (MQ=255)
                                                                                                        ttGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattc                                     <  1:790163‑M1/141‑106 (MQ=255)
                                                                                                           agagCATCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcata                                  <  1:548208‑M1/141‑109 (MQ=255)
                                                                                                                aTCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatc                             >  1:284884‑M1/1‑28 (MQ=255)
                                                                                                                 tCCCTTACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatcc                            <  1:98410‑M1/141‑115 (MQ=255)
                                                                                                                     ttACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatcctcgt                        <  2:976190‑M1/141‑119 (MQ=255)
                                                                                                                     ttACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatcctcgt                        <  2:540351‑M1/141‑119 (MQ=255)
                                                                                                                     ttACCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatcctcgt                        <  2:959522‑M1/141‑119 (MQ=255)
                                                                                                                       aCCGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatctacgagg                      <  1:411387‑M1/141‑121 (MQ=255)
                                                                                                                        ccGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatcctcgtaga                     >  1:179244‑M1/1‑20 (MQ=255)
                                                                                                                        ccGCAAAGTGAAGGATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatcctcgtaga                     <  1:838045‑M1/141‑122 (MQ=255)
                                                                                                                          gCAAAGTGAAGGATGCTCtcaatttatttttgtcgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatcctcgtagatt                   <  1:323348‑M1/141‑124 (MQ=255)
                                                                                                                                tGAAGGATGCTCtgaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattacgtaccgttgttacagcgtcatcattcataaaatcctcgtagattttatca             <  2:525158‑M1/141‑130 (MQ=255)
                                                                                                                                tGAAGGATGCTCtcaatttatgtttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatcctcgtagattttatca             <  2:369560‑M1/141‑130 (MQ=255)
                                                                                                                                 gaatgttgctctcaatttatttgtgttgaaattaatatacgcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatcctcgtagattttatcaa            <  1:819367‑M1/135‑131 (MQ=255)
                                                                                                                                    ggATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatcctcgtagattttatcaagaa         <  2:390841‑M1/141‑134 (MQ=255)
                                                                                                                                    ggATGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatcctcgtagattttatcaagaa         >  2:351555‑M1/1‑8 (MQ=255)
                                                                                                                                      aTGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcggtattaagtaccgttgttacagcgtcatcattcataaaatcctcgtagattttatcaagaatt       <  1:896256‑M1/141‑136 (MQ=255)
                                                                                                                                       tGCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatcctcgtagattttatcaagaattt      <  2:380429‑M1/141‑137 (MQ=255)
                                                                                                                                        gCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatcctcgtagattttatcaagaattta     <  1:686793‑M1/141‑138 (MQ=255)
                                                                                                                                        gCTCtcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatcctcgtagattttatcaagaattta     <  1:737966‑M1/141‑138 (MQ=255)
                                                                                                                                         ctctcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatcctcgtagattttatcaagaatttat    <  2:883001‑M1/141‑139 (MQ=255)
                                                                                                                                           ctcaatttatttttgttgaaattaatataagcttcattctgatagatagtcattaataattgtttgcaaatcgttattaagtaccgttgttacagcgtcatcattcataaaatcctcgtagattttatcaagaatttattc  <  1:118703‑M1/141‑141 (MQ=255)
                                                                                                                                           |                                                                                                                                            
AAAAATAGAATTATTAAAACAACGCAAACAAGGCTTACTACAAAAAATGTTTGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCGTTGTTACAGCGTCATCATTCATAAAATCCTCGTAGATTTTATCAAGAATTTATTCCTCTTA  >  USA300TCH1516_ALE/62678‑62957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.