| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,615,451 | T→A | 5.6% | V106V (GTA→GTT) | fur ← | Ferric uptake regulation protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,615,451 | 0 | T | A | 5.6% | 230.6 / 3.7 | 82 | V106V (GTA→GTT) | fur | Ferric uptake regulation protein |
| Reads supporting (aligned to +/- strand): ref base T (35/41); new base A (3/2); total (38/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAATTTACTATCCTTTACCTTTAGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGACAACTTTTAGTTCAGCTAACAACTCTAACGTTCTG > USA300TCH1516_ALE/1615312‑1615589 | ttagttACTATCCTTGACCTTTAGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTAATCGATTTCATCTa < 2:268589/137‑1 (MQ=255)cAATTTACTATCCTTTACCTTTAGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTa < 2:838001/141‑1 (MQ=255) aTTTACTATCCTTTACCTTTAGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTaca < 2:1008470/141‑1 (MQ=255) tttACTATTCTTTACGTTTTGCTTGGCATGTTTCACACACACCATGGAATGTTAAACGATGATCTAATATTTTAATATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTCACCAATCTTCATCGATTTCATCTacac < 2:554927/141‑1 (MQ=255) ttACTATCCTTTACCTTTAGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACg < 1:529901/141‑1 (MQ=255) ttACTATCCTTTACCTTTAGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTAAATTTACATGTGTTCATCGATTTAATCTAGACg > 1:697161/1‑141 (MQ=255) ttACTATCCTTTACCTTTAGCTTGGCACGTTTCACACAAACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTAGATTTTCAACTTCTGGTAACAAATCTTCATCCATTTCATCAACCCg > 2:931278/1‑141 (MQ=255) cTATCCTTTACCTTTAGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGAcc < 1:783722/141‑1 (MQ=255) tATCCTTTTCCTTTAGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACca < 1:685210/141‑1 (MQ=255) tCCTTTACCTTTAGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACcaca < 1:887589/141‑1 (MQ=255) tttacctttaGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTc < 2:801002/141‑1 (MQ=255) tttacctttaGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGACTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTc > 1:588928/1‑141 (MQ=255) acctttaGCTTGACACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAAAAAATCTTCATCGATTTCATATACAAAACCACATTAcat > 2:1015511/1‑141 (MQ=255) gctttaGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAACTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCcata < 2:707345/140‑1 (MQ=255) cctttaGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCcata > 2:871542/1‑141 (MQ=255) cctttaGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCcata < 1:283521/141‑1 (MQ=255) cctttaGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCcata > 1:67998/1‑141 (MQ=255) taGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAGATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACGACATTCcatacata > 1:73129/1‑141 (MQ=255) aGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCatacatac < 1:899305/141‑1 (MQ=255) aGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCatacatac < 2:975/141‑1 (MQ=255) aGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAAATCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTAAACGACCACATTCCatccatac > 2:21173/1‑141 (MQ=255) cTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTa < 1:954804/141‑1 (MQ=255) ttGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCACACCTACTaa > 2:927824/1‑141 (MQ=255) ttGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCAACACGACCACATTCCATACATACTaa > 2:878411/1‑141 (MQ=255) ttGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCAACACGACCACATTCCATACATACTaa > 2:405658/1‑141 (MQ=255) ggCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAat > 1:726336/1‑141 (MQ=255) ggCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAat > 2:353944/1‑141 (MQ=255) cGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTAGTAACAAATCTTCATCAATTTCATCTACACGACCACATTCCATACATACTAAatgatg > 2:60397/1‑141 (MQ=255) cGTTTCACACACACCATGGAAAGCTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACAAGACCACATTCGATACATACTAAatgatt > 2:383673/1‑140 (MQ=255) ttCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACTTTCCATACATACTACATGAtggtg > 2:300305/1‑141 (MQ=255) ttCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTATCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGAtggtg > 2:68213/1‑141 (MQ=255) acacacacCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACCCGACCCCATTCCATACTTACTAAATCATGGTGaaa > 2:1012083/1‑141 (MQ=255) cacacacCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACAAGACCACATTCCATACATACTAAATGATGGTGGaaa > 2:42517/1‑141 (MQ=255) cacacCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATg < 1:344364/141‑1 (MQ=255) cATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTGATCGATTTCATCTACACGACGACATTCCATACATACTAAATGATGGTGGAGAGGTTTTg > 1:260398/1‑141 (MQ=255) cATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTCCACGACCACATTCCCTACATACTAAATAATGCTGGAAATGTCTTg > 2:69014/1‑141 (MQ=255) tGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTgcg < 2:262840/141‑1 (MQ=255) ggAAAGTTAAACTATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTgcgc < 1:457722/141‑1 (MQ=255) aaaGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCct < 1:634785/141‑1 (MQ=255) gTTAAACGATGATCTAAACTTTTCGGATTACACAGATTTTCAACTCGATTTTCAACTGCTGGGAAGAGAGCTGTGTCGGGTTCATCTGCATGACCACATGCCATACTTACTAAATGATGGTGCAAATGTTTTTCACcttct > 2:177903/1‑141 (MQ=255) tAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCttcttt < 2:142275/141‑1 (MQ=255) atCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATc < 1:11620/141‑1 (MQ=255) cTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCaa < 1:819909/141‑1 (MQ=255) aaaTTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATAATGGTGAAAATGTTTTGCGCCTTCTTTTCTTAAATCaaaaa > 2:716445/1‑140 (MQ=255) aTTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGa > 2:915120/1‑141 (MQ=255) aaaaTTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGAc > 1:495764/1‑141 (MQ=255) cTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCAcc < 1:443931/141‑1 (MQ=255) cTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCAcc < 1:90123/141‑1 (MQ=255) cTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCCTTTCTTAAATCAAAACGAGCGACGCCATCAcc < 2:907432/141‑1 (MQ=255) tCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGTAAATGTTTTGCGCCTTCTTTTCTTAAATCTAAACTAGCGACGCCATCACCa > 1:994679/1‑141 (MQ=255) tCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCa < 1:174274/141‑1 (MQ=255) tCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCa < 2:549572/141‑1 (MQ=255) aTTTTCAACTCGATTTTCAACTTATTGTAGCGAAGCTTCCTCGATTTCATCTACACGACCACATTCTATACACACGAAATTATCGTCTAAATGTTCTTCGCCTTCTGTTCTTAAATCAAAACTAGCGACGCCATCACCaca > 2:19159/1‑139 (MQ=255) tttCAACTTGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGt < 2:847169/141‑1 (MQ=255) ttCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGtt > 2:285057/1‑141 (MQ=255) tCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCCCCTTCTTTTCTTAAATCAAAACGAGAGACGCCATCACCACAGttt > 2:691597/1‑140 (MQ=255) aCTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGCGCGACGCCATCACCAAAGTTAAtt > 1:767703/1‑141 (MQ=255) aCTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAAtt > 1:556049/1‑141 (MQ=255) aCTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAAtt > 1:48618/1‑141 (MQ=255) cgtgATTTTCAACGTCTGGTAACAAATCTTCATCGATTTCATCGACACTACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAAttt < 2:172082/138‑1 (MQ=255) tCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTATACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAAtttt < 2:439071/141‑1 (MQ=255) cGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTg > 1:987328/1‑141 (MQ=255) tttCAACTTCTTGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGa < 2:947903/141‑1 (MQ=255) tttCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGa < 2:544032/141‑1 (MQ=255) tttCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGa < 1:871542/141‑1 (MQ=255) ttCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGAc < 1:600434/141‑1 (MQ=255) tCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGACa < 2:67998/141‑1 (MQ=255) cAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACTACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTTCGCCTTCTTTTATTAAATCAAAACGAGCGATTCCATCCCCCAATCTAATTTTTTCGaaaa > 2:819279/1‑141 (MQ=255) aCTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGACAACt < 2:495764/141‑1 (MQ=255) aCTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTGTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGACAACt < 1:115071/141‑1 (MQ=255) cgtCTGGTAACAGATCTTCATCGATTTCAGCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGACAACtt < 2:806764/139‑1 (MQ=255) tCTGGTAACAAATCTTCATCGATTTCATCAACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGACAACtttt < 1:878411/141‑1 (MQ=255) tCTGGTAACAAATCTTCATCGATTTCATCAACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGACAACtttt < 1:405658/141‑1 (MQ=255) tGGTACGAAATCCTCATCGATTTCATTTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCACAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGACAACTTTTAg < 2:347663/141‑1 (MQ=255) tAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGACAACTTTTAGTTc < 2:741408/141‑1 (MQ=255) cAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGACAACTTTTAGTTCAGc < 1:425201/141‑1 (MQ=255) aaaaTCTGCATCGATTTCATCTACACGACCACATACCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGACAACTTTTAGTTCAGc < 2:588928/140‑1 (MQ=255) aTCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGACAACTTATAGTTCAGCTaa > 2:680502/1‑141 (MQ=255) cATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGACAACTTTTAGTTCAGCTAACAAct > 1:890895/1‑141 (MQ=255) cATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCAACAACTTTTAGTTCAGCTAACAAct > 2:970241/1‑141 (MQ=255) gATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGACAACTTTTAGTTCAGCTAACAACTCTaa < 2:247370/141‑1 (MQ=255) tCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGACAACTTTTAGTTCAGCTAACAACTCTAACGTTCTg > 1:412743/1‑141 (MQ=255) | CAATTTACTATCCTTTACCTTTAGCTTGGCACGTTTCACACACACCATGGAAAGTTAAACGATGATCTAAAATTTTAAAATTGAACTCATTTTCAACTCGATTTTCAACTTCTGGTAACAAATCTTCATCGATTTCATCTACACGACCACATTCCATACATACTAAATGATGGTGGAAATGTTTTGCGCCTTCTTTTCTTAAATCAAAACGAGCGACGCCATCACCAAAGTTAATTTTGTCGACAACTTTTAGTTCAGCTAACAACTCTAACGTTCTG > USA300TCH1516_ALE/1615312‑1615589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |