| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | USA300TCH1516_ALE | 2,373,573 | Δ9 bp | 16.3% | coding (195‑203/1335 nt) | pbuG ← | Guanine/hypoxanthine permease PbuG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2373572 | 16 (0.680) | 3 (0.130) | 3/256 | NT | 16.3% | coding (204/1335 nt) | pbuG | Guanine/hypoxanthine permease PbuG |
| ? | USA300TCH1516_ALE | 2373582 = | 15 (0.650) | coding (194/1335 nt) | pbuG | Guanine/hypoxanthine permease PbuG | |||||
CTGTTAAACCAACTTGCCAAGGAATACCCATGGTTAACACAACAGTAAATGCAAAGAATGCATTTAATCCCATACCTGGTGCTAACGCAATTGGATATTTAGCTATTAGCCCCATGAATAGCGAGCCTACAAATGCTGCTAATGCAGTCGCTACAAAAATGGCACCTTGGTCCATTTTCATATCTTCTGATACGCCTTTAACACCTGCTAAACTTAAAACTTGCGGGTTAACTGCTAAAATATAGGCCATAGATAAGAAAGTTGTGATACCGC > USA300TCH1516_ALE/2373445‑2373717 | cTGTTAAACCAACGTGCCAAGGAATACCCATGGTTAACACAACAGTAAATGCAAAGAATGCATTTAATCCCACACCTGCTACTAACGGGATTGAATATTTAGCTATGAGCCCCATGAATAGCGAGCCTACAAATGCTGCTa < 1:64340/141‑1 (MQ=255) tgatAAACCAACGTGCCAAGGAATACCCATGGTTAACACAACAGTAAATGCAAAGAATGCATTTAATCCCATACCTGGTACTAACGCAATTGGATATTTAGCTATTAGCCCCATGAATAGCGAGCCTACAAATGCTGCTaa < 1:106663/138‑1 (MQ=255) aCCAACTTGCCAAGGAATACCCATGGTTGACACAACAGTAAATGCAAAGAATGCATTTAATCCCATACCTGGTGCTAACGCAAATAGATATTTAGCTATTAGCCCCATGAATAGCGAGCACACACATTATGCTAATGCAGt > 2:193506/1‑141 (MQ=255) ccAACTTGCCAAGGAATACCCATGGTTAACACAACAGTAAATGCAAAGAATGCATTTAATCCCATACCTGGTGCTAACGCAATTGGATATTTAGCTATTA‑CCCCATGAATAGCGAGCCTACAAATGCTGCTAATGCAGTCg < 2:244225/141‑1 (MQ=255) ccAAGGTATACCCCTGGTTAACACAACAGTTAATGCAAAGAATGCATTTAATCCCATACCTGGTGCTAACGCAATTGGATATTTAGCTATTA‑CCCCATGAATAGCGAGCCTACAAATGCTGCTAATGCAGTCGCTACaaaa < 1:175491/141‑1 (MQ=255) aCCCATGGTTAACACAACAGTAAATGCAAAGAATGCATTTAATCCCATACCTGGTGCTAACGCAATTGGATATTTAGCTATTAGCCCCATGAATAGCGAGCCTACAAATGCTGCTAATGCAGTCGCTACAAAAATGGCAcc > 1:274173/1‑141 (MQ=255) aggTAAATGAAAAGAATGCATTTAATCCCATACCTGGTGCGAACGAAATTAGATATTTATCTAATAGCCCGATGAATAGCGAGCCTACAAATTTTGCTAATAAAAAAAAAAAAAAAATGGCACCTTGGTCCATTTTCatat < 2:77295/139‑1 (MQ=255) aaTCCCATACCTGGTGCTAACGCAATTGGATATTTAGCTATTAGCCCCATGAATAGCGAGCCTACAAATGCTGCTAATGCAGTCGCTACAAAAATGGCACCTTGGTCCATTTCCATATCTTCCGATCACCCCTTAacacgc > 2:46033/1‑139 (MQ=255) tgcatttaatcccatacctggtgctaacgcaattggatatttagctattagccccatgaatagcgagcctGCTAATGCAGTCGCTACAAAAATGGCACCTTGGTCCATTTTCATATCTTCTGATACGCCTTTCACACCTGc > 2:77706‑M2/71‑141 (MQ=255) gTGCTAACGCAAATTGATATTTAGCTATTAGCCCCATGAATAGCGAGCCTACAAATGCTGCTAATGCAGTCGCTACAAAAATGGCACCTTGGTCCATTTTCATATCTTCTGATACGCCTTTAACACCTGCTAAACTTaaaa > 2:107899/1‑141 (MQ=255) ggATATTTAGCTATTAGCCCCATGAATAGCGAGCCTACAAATGCTGCTAATGCAGTCGCTACAAAAATGGCACCTTGGTCCATTTTCATATCTTCTGATACGCCTTTAACACCTGCTAAACTTAAAACTTGCGGGTTAACt < 1:241790/141‑1 (MQ=255) gATATTTAGCTATTA‑CCCCATGAATAGCGAGCCTACAAATGCTGCTAATGCAGTCGCTACAAAAATGGCACCTTGGTCCATTTTCATATCTTCTGATACGCCTTTAACACCTGCTAAACTTAAAACTTGCGGGTTAACTGc > 2:101175/1‑141 (MQ=255) caatttgatatttagctattagccccatgaatagcgagcctGCTAATGCAGTCGCTACAAAAATGGCACCTTGGTCCATTTTCATATCTTCTGATACGCCTTTAACACCTGCTAAACTTAAAACTTGCGGGTTAACTGCTa < 2:265666‑M2/100‑1 (MQ=255) atTTAGCTATTAGCCCCATGAATAGCGAGCCTACAAATGCTGCTAATGCAGTCGCTACAAAAATGGCACCTTGGTCCATTTTCATATCTTCTGATACGCCTTTAACACCTGCTAAACTTAAAACTTGCGGGTTAACTGCTa > 2:53618/1‑141 (MQ=255) ttgaGCAATTAGACACATGAATAGCGAGTCTACAAATGCTGATAATGCAGTCGCTACAAAAATGGCACCTTGGTGCATTTCCATATCTTCTGATACGTCTCTATCGAGAAATAGTCTTCAAACGTGCGGGTTAACTGCTaa < 2:134999/138‑1 (MQ=255) tactAGCCCCATGAAGAGCGAGCGTACAAATGCTGCTAATGCAGTAGTCACAAAAAGGGCACCTTGGTCCATTTTCATATCTTCTGATACGCCTTTAACACCTGCTAAACTTAAAACTTGCGGGTTAACTGCTAAAAtata < 2:285747/138‑1 (MQ=255) cccATGAATAGCGAGCCTACAAATGCTGCTAATGCAGTCGCTACAAAAATGGCACCTTGGTCCATTTTCCCAGGCGATGGCTCGCCTTTCCCGGCTGCGAAACTGAGAACGTGCGGGTTAACTGCTAAAATATAGGCCATa < 1:216930/141‑1 (MQ=255) ccatgaatatcgagcctGCTAATTCAGGCGCTACAAAAATGGCACCTTGGTCCATTTTCATATCTTCTGATACGCCTTTAACACCTGCTAAACTTAAAACTTGCGGGTTAACTGCTAAAATATAGGCCATAGATAAGAAAg < 2:219913‑M2/124‑1 (MQ=255) cGAGCCTACAAATGCTGCTAATGCAGTCGCTACAAAAATGGCACCTTGGTCCATTTTCATATCTTCTGATACGCCTTTAACACCTGCTAAACTTAAAACTTGCGGGTTAACTGCTAAAATATAGGCCATAGATAAGAAAGt < 1:213127/141‑1 (MQ=255) tACAAATGCTGCTAATGCAGTCGCTACAAAAATGGCACCTTGGTCCATTTTCATATCTTCTGATACGCCTTTATTTAGTGCGAAACACAAAACTTGCGGGTTAACTGCTAAAATATAGGCCATAGATAAGAAAGTTGTGAt > 1:138705/1‑141 (MQ=255) aTGCTGCTAATGCAGTCGCTACAAAAATGGCACCTTGGTCCATTTTCATATCTTCTGATACGCCTTTAACACCTGCTAAACTTAAAACTTCCGGGTTAACTGCTACAATATAGGCCCTCGATACAAAACTTCTCATAccac > 1:274047/1‑139 (MQ=255) | CTGTTAAACCAACTTGCCAAGGAATACCCATGGTTAACACAACAGTAAATGCAAAGAATGCATTTAATCCCATACCTGGTGCTAACGCAATTGGATATTTAGCTATTAGCCCCATGAATAGCGAGCCTACAAATGCTGCTAATGCAGTCGCTACAAAAATGGCACCTTGGTCCATTTTCATATCTTCTGATACGCCTTTAACACCTGCTAAACTTAAAACTTGCGGGTTAACTGCTAAAATATAGGCCATAGATAAGAAAGTTGTGATACCGC > USA300TCH1516_ALE/2373445‑2373717 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |