| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2866983 = | 74 (1.160) | 3 (0.050) | 3/234 | NT | 4.5% | intergenic (‑382/+71) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein |
| ? | USA300TCH1516_ALE | 2867020 = | 62 (1.080) | intergenic (‑419/+34) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAACAGGATTACATGTTGAGCATAAAGACAAAGATCATGAAGATTATTATGAAATAAAAATTCGAATATATAAACGTTAGTAGTAGGATGTCGTATACATGATGACTAACACATAAAAGACAAAGCTAAGATCATAACAGCTTTGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2867133‑2866983‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctttgtcttttATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCATAATAATCTTCATGATCTTTGTCTTTATGCTCAACATGTAATCCTGTTTGTTGAATCGCTTGGATACTTTTGCCT > USA300TCH1516_ALE/2867020‑2867159 AAACTGGATTAGATGTTGAGCATAAAGACAAATATCATGAAGATTATTATGAAATAAAAATTCGAATATATAAACGTTAGTAGTAGGATGTCGTATACATGATGACTAACACATAAAAGACAAAGCTAAGATCATAACAGC < 2:568016/141‑1 GATTACATGTTGAGCATAAAGACAAAGATCATGAAGATTATTATGAAATAAAAATTCGAATATATAAACGTTAGTAGTAGGATGTCGTATACATGATGACTAACACATAAAAGACAAAGCTAAGATCATAACAGCTATGTC > 2:443514/1‑141 ATTACATGTTGAGCATAAAGACAAAGATCATGAAGATTATTATGAAATAAAAATTCGAATATATAAACGTTAGTAGTAGGATGTCGTATACATGATGACTAACACATAAAAGACAAAGCTAAGATCATAACAGCTTTGTat > 1:61173/1‑139 TTACATGTTGAGCATAAAGACAAAGATCATGAAGATTATTATGAAATAAAAATTCGAATATATAAACGTTAGTAGTAGGATGTCGTATACATGATGACTAACACATAAAAGACAAAGCTAAGATCATAACAGCTTTGTCTT > 1:241353/1‑141 caggtgGAGCAGAAATGCAAAGATCATGAAGATTATTATGAAATAAAAATTAGAATATATAAACGTTAGTAGTAGGATGTCGTATACATGATGACTAACACATAAAAGACAAAGCTAAGATCATAACAGCTTTGTCTTTTt < 2:766878/135‑2 ACAAAGATCATGAAGATTATTATGAAATAAAAATTCGAATATATAAACGTTAGTAGTAGGATGTCGTATACATGATGACTAACACATAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATG > 2:262788/1‑141 ACAAAGATCATGAAGAGTATTATGAAATAAAAATTCGAATATATAAACGTTAGTAGTAGGATGTCGTATACATGATGACTAACACATAAAAGACAAAGCTAAGATCATAACAGCTTTGTCTTTTATGTGTTAGTCATCATG < 2:26350/141‑1 GAATATATAAACGTTAGTAGTAGGATGTCGTATACATGATGACTAACACATAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGA < 1:262788/141‑1 GCTTTGTCTGTTATGTGTTAGTCATCATGTATACGACATCCTACTACTGACGGTGATATATTAGAATTTTTATTTCAGAATAATCTGCATGATCTTTGTCTTTATGCTCAACATGTAACCCTGGTTGTTGAATCGCGTGGA > 2:238625/1‑141 CTTTGTCTGTTATGTGTTAGTCATCATGTATAGGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCATAATAATCTTCATGATCTTTGTCTTTATGCTCAACATGTAAGCCTGTTTGTTGAATCGCTTGGAT < 1:122567/141‑1 TTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCATAATAATCTTCATGATCTTTGTCTTTATGCTCAACATGTAATCCTGTTTGTTGAATCGCTTGGATA < 1:512897/141‑1 TGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTCATCATCATCCTTATATATTCGAATTTTTATTTCATAATAATCTTCATGATCTTTGTCTTTATGCTCAACATGTAATCCTGTTTGTTGAATCGCTTGGATACT < 2:756900/141‑1 TGTCTTTTATGTGTTAGTCATCATGTATACGACATCATACTACTAACGTTTATATATTCGAATTTTTATTTCATAATAATCTTCATGATATTTATCTTTATGATCAACATGTACTACTGTTTGTTGAATCGCTTGGATACT > 2:559978/1‑141 GTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACACCTCTCTCTTATGTTTTCGAATTTTTATTTCATAATAATCTTCATGATCTTTGTCTTTATGCTCAACATGTAATCCTGTTTGTTGAATCGCTTGGATACTT < 2:165276/141‑1 TTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCATAATAATCTTCATGATCTTTGTCTTTATGCTCAACATGTAATCCTGTTTGTTGAATCGCTTGGATACTTTTGCC > 1:430005/1‑141 TATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCATAATAATCTTCATGATCTTTGTCTTTATGCTCAACCTGTAATCCTGTTTGTTGAATCGCTTGGATAATTTTTCCT > 2:475794/1‑141 AAACAGGATTACATGTTGAGCATAAAGACAAAGATCATGAAGATTATTATGAAATAAAAATTCGAATATATAAACGTTAGTAGTAGGATGTCGTATACATGATGACTAACACATAAAAGACAAAGCTAAGATCATAACAGCTTTGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2867133‑2866983‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctttgtcttttATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCATAATAATCTTCATGATCTTTGTCTTTATGCTCAACATGTAATCCTGTTTGTTGAATCGCTTGGATACTTTTGCCT > USA300TCH1516_ALE/2867020‑2867159 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |