BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000731	81	N→G	100%	intergenic (–/‑151)	– / → repA	–/replication protein A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000731	81	0	N	G	100.0%	510.9 / ‑6.5	156	intergenic (–/‑151)	–/repA	–/replication protein A
Reads supporting (aligned to +/- strand): ref base N (0/0); major base G (92/59); minor base A (1/2); total (95/61)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 157 total aligned reads displayed.

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGA  >  CP000731/1‑220

tatttatcaagggtttataaacccttgataaagctatattttcccttttataagttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAAAGATTAgaaaa                                                                                                                                           <  1:545980‑M1/85‑2 (MQ=255)

   tatcaagggtttattataatgagataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGt                                                                                                                                        >  2:710408‑M1/54‑141 (MQ=255)

     tcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGATAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGttt                                                                                                                                      <  2:777778‑M1/90‑1 (MQ=255)

         gggtttataaaaccctgataaagctatattttcccttttataagtttATTTAAAGTGCGATAATAAACTTAATATAACAAAAACCCCAACTTCTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattt                                                                                                                                  >  1:546050‑M1/48‑141 (MQ=255)

             ttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatat                                                                                                                              <  2:719336‑M1/98‑1 (MQ=255)

              tataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatat‑a                                                                                                                            <  1:404553‑M1/99‑1 (MQ=255)

                  aacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AAttt                                                                                                                        >  1:594496‑M1/39‑141 (MQ=255)

                  aacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AAttt                                                                                                                        >  1:206970‑M1/39‑141 (MQ=255)

                   acccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AAtttt                                                                                                                       <  1:514649‑M1/104‑1 (MQ=255)

                   acccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AAtttt                                                                                                                       >  2:346796‑M1/38‑141 (MQ=255)

                    cccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTc                                                                                                                      <  2:198253‑M1/105‑1 (MQ=255)

                    cccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAAACCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACATTTAGAAACAGTTTATTTATAT‑AATTTTc                                                                                                                      <  2:442609‑M1/105‑1 (MQ=255)

                         gataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATAc                                                                                                                 >  1:201190‑M1/32‑141 (MQ=255)

                         gataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATAc                                                                                                                 <  2:40133‑M1/110‑1 (MQ=255)

                          ataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACt                                                                                                                >  1:499645‑M1/31‑141 (MQ=255)

                          ataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACt                                                                                                                >  2:487978‑M1/31‑141 (MQ=255)

                          ataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACt                                                                                                                >  1:345619‑M1/31‑141 (MQ=255)

                             aagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGt                                                                                                             >  2:455397‑M1/28‑141 (MQ=255)

                              agctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGta                                                                                                            >  1:162947‑M1/27‑141 (MQ=255)

                                  atattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGtattat                                                                                                        <  2:621236‑M1/119‑1 (MQ=255)

                                    attttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCTATACTTGTATtatat                                                                                                      >  1:238702‑M1/21‑141 (MQ=255)

                                    attttcacttttttaagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATtatat                                                                                                      >  2:650418‑M1/21‑141 (MQ=255)

                                     ttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATtatata                                                                                                     <  1:698089‑M1/122‑1 (MQ=255)

                                        tcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATg                                                                                                  >  1:491052‑M1/17‑141 (MQ=255)

                                         cccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGa                                                                                                 <  1:326404‑M1/126‑1 (MQ=255)

                                         cccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGa                                                                                                 <  1:613141‑M1/126‑1 (MQ=255)

                                              ttataagtttATTTAAAGGGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGaataat                                                                                            >  1:212907‑M1/11‑141 (MQ=255)

                                                 taagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAATCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATc                                                                                         >  2:73338‑M1/8‑141 (MQ=255)

                                                 taagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATc                                                                                         >  1:81766‑M1/8‑141 (MQ=255)

                                                  aagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCt                                                                                        <  2:108424‑M1/135‑1 (MQ=255)

                                                  aagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCt                                                                                        >  2:676818‑M1/7‑141 (MQ=255)

                                                  aaatttATTTAAAGTGCTATAATAAACTTAATATAACAAAAGCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCt                                                                                        >  1:17792‑M1/7‑141 (MQ=255)

                                                          ttAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCaa                                                                                >  2:321420/1‑141 (MQ=255)

                                                            aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑c                                                                             >  2:79896/1‑141 (MQ=255)

                                                             aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTCTTATATAATGAATAATATCTTAGTGCCAG‑Ca                                                                            >  1:306903/1‑141 (MQ=255)

                                                              aGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CAc                                                                           >  1:431556/1‑141 (MQ=255)

                                                              aGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CAc                                                                           <  1:593272/141‑1 (MQ=255)

                                                                  cTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTaa                                                                       >  2:476274/1‑141 (MQ=255)

                                                                  cTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTaa                                                                       >  2:441238/1‑141 (MQ=255)

                                                                  cTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTaa                                                                       >  1:391564/1‑141 (MQ=255)

                                                                   tataATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTaaa                                                                      >  1:125413/1‑141 (MQ=255)

                                                                    ataataAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAAt                                                                     <  1:57442/141‑1 (MQ=255)

                                                                    ataataAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAAt                                                                     <  1:138843/141‑1 (MQ=255)

                                                                      aagaaaCTTAATATAAAAAAAAACCAAACTACTAATAATACTCGGGGAATGGTAATAAAAAATATAAAAAAAGATTAAAAATAT‑AATTTTCGATACTTGTATTAAACAAATAATAATAACTTTGTGCAAG‑CACCTAAATCa                                                                   <  2:203326/138‑1 (MQ=255)

                                                                       ataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCAt                                                                  <  1:95694/141‑1 (MQ=255)

                                                                        taaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCAtt                                                                 >  1:600655/1‑141 (MQ=255)

                                                                         aaaCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATta                                                                >  1:381583/1‑141 (MQ=255)

                                                                           aCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCACtaaa                                                              >  1:250465/1‑141 (MQ=255)

                                                                              tAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATtaaataa                                                           >  1:730362/1‑141 (MQ=255)

                                                                              tAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATtaaataa                                                           >  1:159392/1‑141 (MQ=255)

                                                                               aaTATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATtaaataaa                                                          <  1:98070/141‑1 (MQ=255)

                                                                                 tataACAAAAACCTCAACTACTGGTAATAGTCGGTGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATg                                                        <  2:191139/141‑1 (MQ=255)

                                                                                 tataACAAAAACCCCAACTCCGGCCTAAAGACGAGTATTGGTAATAAAACGTTTAGAAACAGATGATGAAAAG‑AATAGGCAAAACATGTAGAATAGAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATg                                                        >  2:391769/1‑141 (MQ=255)

                                                                                  ataACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATGATTAAATAAATGt                                                       >  1:476293/1‑141 (MQ=255)

                                                                                  ataAAAAAAACCCCAACTACTGTTAATAGTCTGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTGTCGATACTTGTATTATATAATGAATAATATCTTACTGCAAG‑CACCTAAATCATTAAATAAATGt                                                       <  2:513396/141‑1 (MQ=255)

                                                                                   taACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATAAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTa                                                      >  2:416748/1‑141 (MQ=255)

                                                                                   aaaCAAAAACCACAACTACTGGTAATAGTCTGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTa                                                      <  2:23045/140‑1 (MQ=255)

                                                                                      cAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAg                                                   >  1:408092/1‑141 (MQ=255)

                                                                                      cAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAg                                                   >  1:39302/1‑141 (MQ=255)

                                                                                      cAAAAACCCCAACTACTGGAAATAGTCGAGGTTTGGTAATAAAAAGTTTACAAACAGTTTATATACAG‑AATATTTAATACTTTTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATACATGTAAAg                                                   >  2:239989/1‑141 (MQ=255)

                                                                                       aaaaaCGCCAACAACTGGTAAAAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGc                                                  <  2:606647/141‑1 (MQ=255)

                                                                                        aaaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCt                                                 <  1:719336/141‑1 (MQ=255)

                                                                                          aaCCCCAACTACTGGTAATAGTAGGGGTTTGGTAATAAAACGTTTAGAAACAGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTTCAAG‑CACCTAAATCATTAAATAAATGTAAAACtaa                                               >  2:645248/1‑141 (MQ=255)

                                                                                           aCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCtaaa                                              >  1:645881/1‑141 (MQ=255)

                                                                                           aCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AAATTTCGATACTTGTATTATATAATTAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCtaaa                                              >  1:739399/1‑141 (MQ=255)

                                                                                            ccccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCtaaat                                             >  2:573851/1‑141 (MQ=255)

                                                                                            ccccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCtaaat                                             >  1:271333/1‑141 (MQ=255)

                                                                                            ccccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCtaaat                                             >  1:619782/1‑141 (MQ=255)

                                                                                            ccccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAAAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCtaatt                                             >  2:249039/1‑139 (MQ=255)

                                                                                            ccccAACTACTAGTAATAGTCGGGGTTTGTTAATATAGCATAGAAAAACTGTTTATTTATAT‑ATTTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCtaaat                                             <  2:514649/141‑1 (MQ=255)

                                                                                             cccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCtaaata                                            >  1:298401/1‑141 (MQ=255)

                                                                                             cccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATGTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCtaaata                                            >  1:184679/1‑141 (MQ=255)

                                                                                              ccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCtaaataa                                           >  1:60040/1‑141 (MQ=255)

                                                                                               cAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTGTATGTTGAATAATATCTTAG‑GCGCGTCGCGTAAATCATTAAATAAATGTAAAGCtgaattaa                                          >  2:129107/1‑141 (MQ=255)

                                                                                                aaCTACTGGTAATAGTCGGGGTTTAGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATaaaa                                         <  2:344293/141‑1 (MQ=255)

                                                                                                 actactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGAAAC‑TCGTTAAATCATTAAATAACTGTCAAGCACACTaaaaa                                        >  2:514667/1‑141 (MQ=255)

                                                                                                  ctactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAAc                                       <  2:49586/141‑1 (MQ=255)

                                                                                                  ctactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAAc                                       >  2:268857/1‑141 (MQ=255)

                                                                                                   tactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACg                                      <  2:141565/141‑1 (MQ=255)

                                                                                                    actGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGt                                     <  2:613141/141‑1 (MQ=255)

                                                                                                      tGGGAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTCTATCCATCGTGGA‑GTTGGTATTTTGTAATGAATAATATCTTAGTGCTAG‑TACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGttt                                   <  2:355007/141‑1 (MQ=255)

                                                                                                         tAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTttat                                <  1:353675/141‑1 (MQ=255)

                                                                                                               tCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACctc                          <  2:266737/141‑1 (MQ=255)

                                                                                                               gcGGGGTGTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACctc                          <  1:646122/140‑1 (MQ=255)

                                                                                                                cGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACctct                         >  1:664933/1‑141 (MQ=255)

                                                                                                                    gTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTAGATACTTGTATTATATAATGAATAATATATTATTGCAAG‑CACCTAAATAATTAAATAAATATAAAGCTAAATAAAAACGTTTTATTAACTCTTaac                     >  2:180474/1‑139 (MQ=255)

                                                                                                                      ttGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCaa                   <  1:120105/141‑1 (MQ=255)

                                                                                                                       tGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CCCCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCaaa                  >  1:493424/1‑141 (MQ=255)

                                                                                                                       tGGTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCaca                  >  2:665440/1‑139 (MQ=255)

                                                                                                                        ggTAATAAAACGTTTAGAAACTGTTTCTTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTACATAAATGCAAAGCTAAATAACAACGTTTTATTACCTCTTACAAAAc                 >  2:394820/1‑141 (MQ=255)

                                                                                                                        ggTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTCCATTAAAACGTTTTCTTGTCTCATACCAAAc                 >  1:177637/1‑141 (MQ=255)

                                                                                                                        ggTAATAAAACGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAAc                 >  1:111149/1‑141 (MQ=255)

                                                                                                                               aaaCGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAata          <  1:198253/141‑1 (MQ=255)

                                                                                                                                aaCGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAatat         >  2:303940/1‑141 (MQ=255)

                                                                                                                                aaCGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATATTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAAAGTTTGAATACCTCTTACAAAACTAAAatat         >  2:125020/1‑141 (MQ=255)

                                                                                                                                  cGTTTAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATgg       >  1:443792/1‑141 (MQ=255)

                                                                                                                                   ttttAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATTTAATGAATAGTATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGa      <  2:87779/140‑1 (MQ=255)

                                                                                                                                     ttAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGaaa    <  1:321420/141‑1 (MQ=255)

                                                                                                                                      tAGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAag   >  2:221067/1‑141 (MQ=255)

                                                                                                                                       aGAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAaga  >  2:577480/1‑141 (MQ=255)

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATAT‑AATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAG‑CACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGA  >  CP000731/1‑220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`