BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	2,072,011:1	+A	7.4%	intergenic (+506/+67)	ykgB → / ← USA300HOU_1927	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	2,072,011	1	.	A	7.4%	404.4 / 16.8	106	intergenic (+506/+67)	ykgB/USA300HOU_1927	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (49/49); new base A (2/3); total (51/55)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01

Only 100 of 109 total aligned reads displayed.

AAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTA  >  CP000730/2071871‑2072150

aaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGat                                                                                                                                               <  1:1489148/141‑1 (MQ=32)

  aTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGat‑at                                                                                                                                            >  2:1298032/1‑141 (MQ=32)

            aaTACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTcaatta                                                                                                                                   <  1:474396/141‑6 (MQ=12)

            aaTACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑g                                                                                                                                 <  1:271130/141‑1 (MQ=32)

                 gtagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAAt                                                                                                                            <  2:549076/141‑1 (MQ=32)

                  tagtaTAAATGGCGAGGCTTCTGAGGGAGCACTGCCCGTCGAAGACCAAGGCGGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAGGATAATTTTCAATTA‑GAAAAt                                                                                                                            <  2:903543/141‑1 (MQ=11)

                      aTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCt                                                                                                                       >  2:419475/1‑141 (MQ=32)

                         aaTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATGATTTTC‑AATTAGAAAA‑TATCttgc                                                                                                                    <  1:915579/141‑3 (MQ=11)

                         aaTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTAc                                                                                                                    <  2:55381/141‑1 (MQ=11)

                         aaTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTAc                                                                                                                    <  2:1593981/141‑1 (MQ=32)

                         aaTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTAc                                                                                                                    <  2:352637/141‑1 (MQ=32)

                         aaTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTAc                                                                                                                    <  1:363510/141‑1 (MQ=32)

                           tGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTActg                                                                                                                  >  1:836693/1‑141 (MQ=32)

                            ggCGAGACTCGTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTActgc                                                                                                                 <  1:1417581/141‑1 (MQ=17)

                             gCGGGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTActgct                                                                                                                <  1:764380/141‑1 (MQ=17)

                             gCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATGATTTTC‑AATT‑AGAAAATATCTTgctgct                                                                                                                <  1:109572/141‑1 (MQ=11)

                             gCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTActgct                                                                                                                <  1:1089041/141‑1 (MQ=32)

                             gCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTActgct                                                                                                                <  1:343893/141‑1 (MQ=32)

                             gCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTActgct                                                                                                                <  1:676836/141‑1 (MQ=32)

                             gCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTActgct                                                                                                                <  2:1300467/141‑1 (MQ=32)

                             gCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTActgct                                                                                                                <  1:766297/141‑1 (MQ=32)

                             gCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTActgct                                                                                                                <  1:468148/141‑1 (MQ=32)

                              cGAGACTCCAGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATGATTTTCAATTA‑GAAAA‑TATCTTGctgctg                                                                                                               <  1:542009/141‑1 (MQ=11)

                                agaCTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGtt                                                                                                             >  1:1478089/1‑141 (MQ=32)

                                  aCTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTAc                                                                                                                    <  1:1304287/132‑1 (MQ=33)

                                  aCTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTAc                                                                                                                    >  2:1304287/1‑132 (MQ=33)

                                  aCTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGtttt                                                                                                           <  1:251520/141‑1 (MQ=32)

                                     ccTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTa                                                                                                        <  2:890454/141‑1 (MQ=32)

                                      cTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAg                                                                                                       >  1:1292179/1‑141 (MQ=32)

                                       tGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAgg                                                                                                      >  1:866912/1‑141 (MQ=32)

                                        gAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAggg                                                                                                     >  2:1026477/1‑141 (MQ=32)

                                             aGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTa                                                                                                <  1:654802/141‑1 (MQ=32)

                                             aGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATCATCTTACTGCTGTTTTTTAGGGATTTa                                                                                                >  1:333188/1‑141 (MQ=17)

                                                aGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGt                                                                                             >  2:472235/1‑141 (MQ=32)

                                                aGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGt                                                                                             >  2:1384262/1‑141 (MQ=32)

                                                aGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGt                                                                                             >  1:190360/1‑141 (MQ=32)

                                                 gTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGCACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTc                                                                                            <  2:542811/141‑1 (MQ=17)

                                                   gCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTccc                                                                                          <  2:411487/141‑1 (MQ=32)

                                                   gCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTAGTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTccc                                                                                          <  2:1193576/141‑1 (MQ=17)

                                                    ccAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCa                                                                                         >  1:513184/1‑141 (MQ=32)

                                                    ccAGACGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCa                                                                                         >  2:816384/1‑141 (MQ=17)

                                                         cGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCctc                                                                                    >  1:1439096/1‑141 (MQ=32)

                                                         cGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCctc                                                                                    >  1:810009/1‑141 (MQ=32)

                                                         cGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCctc                                                                                    <  2:897955/141‑1 (MQ=32)

                                                          gAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCctct                                                                                   <  2:849448/141‑1 (MQ=32)

                                                          gAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCctct                                                                                   <  1:616440/141‑1 (MQ=32)

                                                           aaGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTa                                                                                  >  1:1528408/1‑141 (MQ=33)

                                                               ccAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAgg                                                                                                      >  2:445890/1‑117 (MQ=32)

                                                               ccAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAgg                                                                                                      <  1:445890/117‑1 (MQ=32)

                                                                  aGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGtta                                                                           >  1:836971/1‑141 (MQ=35)

                                                                   ggCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGttat                                                                          >  1:836615/1‑141 (MQ=37)

                                                                   ggCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGttat                                                                          >  1:833291/1‑141 (MQ=37)

                                                                   ggCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGttat                                                                          <  2:1044777/141‑1 (MQ=37)

                                                                      tGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAg                                                                       >  1:345248/1‑141 (MQ=39)

                                                                      tGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAAGT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAg                                                                       <  1:1161530/141‑1 (MQ=255)

                                                                       gagaCGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGATTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGt                                                                      >  2:1643181/1‑141 (MQ=255)

                                                                         gaCGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTa                                                                    >  2:870077/1‑141 (MQ=255)

                                                                           cGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTAtt                                                                  <  2:1143700/141‑1 (MQ=255)

                                                                            ggCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTAttt                                                                 >  2:1544187/1‑141 (MQ=255)

                                                                             gCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTAtttt                                                                <  2:254283/141‑1 (MQ=255)

                                                                             gCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTAACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTAtttt                                                                >  2:1317109/1‑141 (MQ=255)

                                                                              cACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGTTTTATGTCCCAGCCTCTAAATGTTATTAGTTAttttt                                                               <  2:391557/141‑1 (MQ=255)

                                                                              cACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTAttttt                                                               <  1:1125338/141‑1 (MQ=255)

                                                                                cccTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTAc                                                             >  2:538375/1‑141 (MQ=255)

                                                                                  cTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACtt                                                           <  2:1642774/141‑1 (MQ=255)

                                                                                     ggAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCa                                                        >  1:627302/1‑141 (MQ=255)

                                                                                            gAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAg                                                 <  1:427543/141‑1 (MQ=255)

                                                                                               gCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGaaa                                              <  1:590228/141‑1 (MQ=255)

                                                                                                ccATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAaat                                             <  2:833291/141‑1 (MQ=255)

                                                                                                     caatacttcgTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAAttt                                        >  1:1566906/10‑141 (MQ=255)

                                                                                                     cAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAAttt                                        >  1:165845/1‑141 (MQ=255)

                                                                                                      aatacttcgTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAACAATTTc                                       >  1:708507/9‑141 (MQ=255)

                                                                                                       aTACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCt                                      <  2:1482063/141‑1 (MQ=255)

                                                                                                        tACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCtt                                     <  2:31812/141‑1 (MQ=255)

                                                                                                          cGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTa                                   <  1:1138113/141‑1 (MQ=255)

                                                                                                           gAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAg                                  <  2:345248/141‑1 (MQ=255)

                                                                                                            aaGTATTGTATAAATAGAGAACAGCAGCAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGt                                 <  2:261452/141‑1 (MQ=255)

                                                                                                             aGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGtt                                >  2:687914/1‑141 (MQ=255)

                                                                                                              gTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGttt                               <  2:883916/141‑1 (MQ=255)

                                                                                                                aTTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGttttt                             >  1:162821/1‑141 (MQ=255)

                                                                                                                    tataAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTtttcttt                         >  2:289413/1‑141 (MQ=255)

                                                                                                                     ataAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTtttctttc                        >  2:1000997/1‑141 (MQ=255)

                                                                                                                     ataAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTtttctttc                        >  1:1460466/1‑141 (MQ=255)

                                                                                                                       ccctaaaaaaCAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTATTTTTTTTATCAGAAATAATTTCTTTAGTTTTTCTTTCaa                      >  2:1190927/9‑141 (MQ=21)

                                                                                                                       ccctaaaaaaCAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCaa                      >  2:1190835/9‑141 (MQ=25)

                                                                                                                        aaTAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAat                     <  2:162821/141‑1 (MQ=255)

                                                                                                                          tAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAatat                   >  1:1160881/1‑141 (MQ=255)

                                                                                                                           agagAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTCGTTTTTCTTTCAATATc                  >  1:1335344/1‑141 (MQ=255)

                                                                                                                           agagAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATc                  >  2:1103470/1‑141 (MQ=255)

                                                                                                                            gagaACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCt                 >  1:1175874/1‑141 (MQ=255)

                                                                                                                              gaACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTc               <  2:638194/141‑1 (MQ=255)

                                                                                                                               aaCAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCa              >  2:922449/1‑141 (MQ=255)

                                                                                                                                 cagcagTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATCAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAatagaaacgtt            >  1:359205/1‑133 (MQ=255)

                                                                                                                                   gcagTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTCTTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAAt          >  2:730137/1‑141 (MQ=255)

                                                                                                                                   gcagTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAAt          >  2:1061823/1‑141 (MQ=255)

                                                                                                                                    cagTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATc         <  1:1298032/141‑1 (MQ=255)

                                                                                                                                      gTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTCCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCtt       <  1:1152482/141‑1 (MQ=255)

                                                                                                                                      gTAAGAT‑AATTTTCAATT‑AGAAAATATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTAAAAATCtt       >  2:525653/1‑141 (MQ=37)

                                                                                                                                       tAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCCGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCttt      >  1:435264/1‑141 (MQ=255)

                                                                                                                                           at‑atTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTa  <  2:1377418/141‑1 (MQ=255)

AAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTA  >  CP000730/2071871‑2072150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`