| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1853642 | 110 (0.850) | 6 (0.050) | 5/238 | NT | 5.5% | intergenic (+45/+53) | acuC/ccpA | acetoin utilization protein AcuC/catabolite control protein A |
| ? | CP000730 | = 1853674 | 105 (0.870) | intergenic (+77/+21) | acuC/ccpA | acetoin utilization protein AcuC/catabolite control protein A | |||||
TTAAATGATTATACCTATGTCCCCCGCACAAAAGAAATTAGTGAAAAAAATAAAAAATTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1853496‑1853642‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcattcATCTAACGACCCAAATTATATGGGT‑GTTGGAAGAATGCCTTTTATTTATCTTTTAAAATCGTTGCAGATTAGGTTACTTATTGACGAGTAGATTCGTACCAACTCGCTATATGTAAAGCTAATTTTTTATTTTTTTCAC < CP000730/1853674‑1853536 TTAAATGATTATACCTATGTCCCCCGCACAAAAGAAATTAGTGAAAAAAATAAAAAATTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAG > 2:1497794/1‑141TTAAATGATTATACCTATGTCCCCCGCACAAAAGAAATTAGTGAAAAAAATAAAAAATTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAG > 1:183307/1‑141TTAAATGATTATACCTATGTCCCCCGCACAAAAGAAATAAGAGAAAAAAATAAAAAATTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAG < 2:1000901/141‑1TTAAATGATTATACCTATGTCCCCCGCACAAAAGAAAAAAAAAAAAAAAATAAAAAATTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAG < 2:627750/141‑1 TAAATGATTATACCTATGTCCCCCGCACAAAAGNAATNAGTGAAAAAAATAAAAAATTAGCTTTACATATAGCGAGTTGGTACGAATTTACTCATCAATAAATAACCTAATCTGCAACGATTTTAAAAGATAAATNATAGG > 1:561272/1‑141 TAAATGATTATACCTATGTCCCCCGCACAAAAGAAATTAGTGAAAAAAATAAAAAATTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATGAATAAAAGG < 1:1458002/141‑1 TAAATGATTATACCTATGTCCCCCGCACAAAAGAAATTAGTGAAAAAAATAAAAAATTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGG < 1:704755/141‑1 TGATTATACCTATGTCCCCCGCACAAAAGAAATTAGTGAAAAAAATAAAAAATTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATT > 1:1360218/1‑141 AATTAGTGAAAAAAATAAAAAATTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCATCTAACGACCCAAATTATATGGGT‑GTTG < 1:806444/141‑1 AATTAGTGAAAAAAATAAAAAATTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCATCTAACGACCCAAATTATATGGGT‑GTTG < 1:806788/141‑1 ATTATTGAAAAAAATAAAAAATTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCATCTAACGACCCAAATTATATGGGT‑GTTGG < 2:321105/141‑1 TGAAAAAAATAAAAAATTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCATCTAACGACCCAAATTATATGGGT‑GTTGGAAGAA < 1:1632044/141‑1 TAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAAC‑ACCCATATAATTTGGGTCGTTAGATGAATGCCTTTTATTTATCTTTTAAAATCGTTGCAGATTAGGTTACTTATTGACGAGTAGATTCGT > 1:1076997/1‑141 TAAATAAAAGGCATTCTTCCAAC‑ACCCATATAATTTGGGTCGTTAGATGAATGCCTTTTATTTATCTTTTAAAATCGTTGCAGATTAGGTTACTTATTGACGAGTAGATTCGTACCAACTCGCTATATGTAAAGCTAATTT > 1:170983/1‑141 AGGCATTCATCTAACGACCCAAATTATATGGGT‑GTTGGAAGAATGCCTTTTATTTATCTTTTAAAATCGTTGCAGATTAGGTTACTTATTGACGAGTCGATTCGTACCAACTCGCTATATGTAAAGCTAATTTTTTATTTT > 1:1300222/1‑141 AGGCATTCATCTAACGACCCAAATTATATGGGT‑GTTGGAAGAATGCCTTTTATTTATCTTTTAAAATCGTTGCAGATTAGGTTACTTATTGACGAGTAGATTCGTACCAACTCGCTATATGTAAAGCTAATTTTTTATTTT > 1:267673/1‑141 AGGCATTCATCTAACGACCCAAATTATATGGGT‑GTTGGAAGAATGCCTTTTATTTATCTTTTAAAATCGTTGCAGATTAGGTTACTTATTGACGAGTAGATTCGTACCAACTCGCTATATGTAAAGCTAATTTTTTATTTT > 2:183307/1‑141 GGCATTCATCTAACGACCCAAATTATATGGGT‑GTTGGAAGAATGCCTTTTATTTATCTTTTAAAATCGTTGCAGATTAGGTTACTTATTGACGAGTAGATTCGTACCAACTCGCTATATGTAAAGCTAATTTTTTATTTTT > 1:473842/1‑141 CATTCATCTAACGACCCAAATTATATGGGT‑GTTGGAAGAATGCCTTTTATTTATCTTTTAAAATCGTTGCAGATTAGGTTACTTATTGACGAGTAGATTCGTACCAACTCGCTATATGTAAAGCTAATTTTTTATTTTTTT > 2:1393454/1‑141 TCATCTAACGACCCAAATTATATGGGT‑GTTGGAAGAATGCCTTTTATTTATCTTTTAAAATCGTTGCAGATTAGGTTACTTATTGACGAGTAGATTCGTACCAACTCGCTATATGTAAAGCTAATTTTTTATTTTTTTCAC < 2:221515/141‑1 TCATCTAACGACCCAAATTATATGGGT‑GTTGGAAGAATGCCTTTTATTTATCTTTTAAAATCGTTGCAGATTAGGTTACTTATTGACGAGTAGATTCGTACCAACTCGCTATATGTAAAGCTAATTTTTTATTTTTTTCAC < 2:1256498/141‑1 TTAAATGATTATACCTATGTCCCCCGCACAAAAGAAATTAGTGAAAAAAATAAAAAATTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1853496‑1853642‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcattcATCTAACGACCCAAATTATATGGGT‑GTTGGAAGAATGCCTTTTATTTATCTTTTAAAATCGTTGCAGATTAGGTTACTTATTGACGAGTAGATTCGTACCAACTCGCTATATGTAAAGCTAATTTTTTATTTTTTTCAC < CP000730/1853674‑1853536 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |