New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2653484 =	115 (0.890)	5 (0.040)	5/248	NT	4.6%	coding (18/153 nt)	USA300HOU_2506	hypothetical protein
	?	CP000730	2653543 =	97 (0.770)					coding (77/153 nt)	USA300HOU_2506	hypothetical protein
Rejected: Frequency below/above cutoff threshold.

GTCGGTCATTTCATTAATTTATTAGTTGATTTTGCATTTTTTTGCTGTAAAGTTGTTATAATACAGTTAACAGGAATTAGCATAGATACACCAATCCCCTCACTACTCGCAATAGTGAGGGGATTTTTTTCGGTGTAGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2653624‑2653484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaTGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTCTACTCCAATTTAA  >  CP000730/2653543‑2653648                                                                                                                                                                                                                                                         GTCGGTCATTTCATTAATTTATTAGTTGATTTTGCATTTTTTTGCTGTAAAGTTGTTATAATACAGTTAACAGGAATTAGCATAGATACACCAATCCCCTCACTACTCGCAATAGTGAGGGGATTTTTTTCGGTGTAGCTA                                                                                                            <  1:36551/141‑1                                                                               AGCATAGATACACCAATCCCCTCACTACTCGCAATAGTGAGGGGATTTTTTTCGGTGTAGCTATGATAATTCCTGTTAACTGTATTATAACGACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGAC                              >  2:1461672/1‑141                                                                                GCATAGATACACCAATCCCCTCACTACTCGCAATAGTGAGGGGATTTTTTTCGGTGTAGCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACC                             >  1:545896/1‑141                                                                                           CCAATCCCCTCACTACTCGCAATAGTGAGGGGATTT‑‑‑‑‑‑GTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTCTAC            >  2:613686/1‑141                                                                                              ATCCCCTCACTACTCGCAATAGTGAGGGGATTTTTTTCGGTGTAGCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTC               <  2:545896/141‑1                                                                                                           TCGCAATAGTGAGGGGATTTTTTTCGGTGTAGCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTCTACTCCAATTTAA  >  2:1048862/1‑141                                                                                                                                                                                                                                                         GTCGGTCATTTCATTAATTTATTAGTTGATTTTGCATTTTTTTGCTGTAAAGTTGTTATAATACAGTTAACAGGAATTAGCATAGATACACCAATCCCCTCACTACTCGCAATAGTGAGGGGATTTTTTTCGGTGTAGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2653624‑2653484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaTGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTCTACTCCAATTTAA  >  CP000730/2653543‑2653648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.