BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1533866 =	136 (1.050)	7 (0.060)	7/232	NT	5.7%	coding (207/576 nt)	USA300HOU_1400	hypothetical protein
*	?	CP000730	1533900 =	108 (0.920)	7 (0.060)	7/232	NT	5.7%	coding (173/576 nt)	USA300HOU_1400	hypothetical protein

Only 100 of 151 total aligned reads displayed.

CACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATAAA  >  CP000730/1533761‑1534039

cacGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTc                                                                                                                                             <  1:36874/141‑1 (MQ=255)

cacGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTc                                                                                                                                             >  2:1069096/1‑141 (MQ=255)

    tttGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAAt                                                                                                                                         >  1:1659264/1‑141 (MQ=255)

    tttGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAAt                                                                                                                                         >  1:43424/1‑141 (MQ=255)

     ttGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATg                                                                                                                                        <  2:911784/141‑1 (MQ=255)

        cGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGttt                                                                                                                                     >  2:973339/1‑141 (MQ=255)

        cGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGttt                                                                                                                                     >  1:609303/1‑141 (MQ=255)

         tgaagggggatGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑c                                                                                                                                   <  2:1117267/131‑1 (MQ=255)

          aaGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑Ca                                                                                                                                  >  2:116081/1‑141 (MQ=255)

          aaGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑Ca                                                                                                                                  >  1:237010/1‑141 (MQ=255)

              gAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑Catgat                                                                                                                              <  2:1308209/141‑1 (MQ=255)

                aTTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CAtgatga                                                                                                                            <  1:1144252/141‑1 (MQ=255)

                  ttGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGAtt                                                                                                                          >  1:1168786/1‑141 (MQ=255)

                     aaTATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAAt                                                                                                                       >  2:358590/1‑141 (MQ=255)

                     aaTATCAAAAGCACACTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAAt                                                                                                                       <  1:1378159/141‑1 (MQ=255)

                      atatCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAAtt                                                                                                                      <  2:1016138/141‑1 (MQ=255)

                        atCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATGTGTTTGGATTAACTGTATGTTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAAtttt                                                                                                                    <  1:1485014/141‑1 (MQ=255)

                          cAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTg                                                                                                                  >  2:108104/1‑141 (MQ=255)

                          cAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTg                                                                                                                  <  1:381575/141‑1 (MQ=255)

                          cAAAAGCAAAGATATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTg                                                                                                                  >  2:332936/1‑141 (MQ=255)

                            aaaGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTa                                                                                                                <  1:363802/141‑1 (MQ=255)

                             atataaaagtgaatgaggcgaaattggcaaacattcattttgtagatacaaaaattaatcatcatgaaacattagaaattgcagaagcgtgacttcccacttctgcaattTCTAATGTTT‑CATGATGATTAATTTTTGTAt                                                                                                               <  2:447119‑M2/31‑1 (MQ=255)

                             aaGCACCGTTATGATTAGCGATATAACCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTTGTAAATTGAATTGCAGAAGCGTAACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTAt                                                                                                               <  2:539529/141‑1 (MQ=255)

                             aaGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCCCTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTAt                                                                                                               >  2:585884/1‑141 (MQ=255)

                             aaGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTGATGTTT‑CATGATGATTAATTTTTGTAt                                                                                                               >  2:1641517/1‑141 (MQ=255)

                             aaGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTAt                                                                                                               >  2:1641123/1‑141 (MQ=255)

                              aGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAAt                                                                                                                                         <  2:1111167/115‑1 (MQ=255)

                              aGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAAt                                                                                                                                         >  1:1111167/1‑115 (MQ=255)

                              aGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATc                                                                                                              <  1:1418809/141‑1 (MQ=255)

                                cacaGTTATGATTAGCGATATAATCACATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTa                                                                                                            >  1:465652/1‑141 (MQ=255)

                                cacaGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTa                                                                                                            >  1:1524502/1‑141 (MQ=255)

                                cacaGTTAAGGTTAGCAATATAGACAAAGATTTCATTTGTATTCGTTAACTTTATCTTTAGCATATTAAATTGAATTGCAGAAGCTTGACTTCCCACTTCTACAATTTTTACTATTG‑AATGATGATCAATATTTGTATCtt                                                                                                            >  2:1650071/1‑140 (MQ=255)

                                  caGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACa                                                                                                          >  1:1517633/1‑141 (MQ=255)

                                   aGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACaa                                                                                                         >  2:284911/1‑141 (MQ=255)

                                     ttATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACaaaa                                                                                                       <  1:1646552/141‑1 (MQ=255)

                                      tATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAaat                                                                                                      <  1:1435117/141‑1 (MQ=255)

                                       aTGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAaatg                                                                                                     <  2:425904/141‑1 (MQ=255)

                                          aTTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTACTGTTTCCATG‑TCACTAATTTTTGTATCTACAAaatgaat                                                                                                  <  2:73834/141‑1 (MQ=255)

                                             aGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGtt                                                                                               <  1:259549/141‑1 (MQ=255)

                                              gCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGttt                                                                                              >  2:825789/1‑141 (MQ=255)

                                              gCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATAACGATTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTATGCAATTTCTAATGTTA‑CATGATGATTAATTTTTGTATCTACAAAATGAATGttt                                                                                              >  2:644099/1‑141 (MQ=255)

                                                 atatAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGcc                                                                                           <  1:1536965/141‑1 (MQ=255)

                                                       tCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTc                                                                                     >  2:373591/1‑141 (MQ=255)

                                                        cAAATATGTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCg                                                                                    <  2:1164456/141‑1 (MQ=255)

                                                          aacattcattttgtagatacaaaaattaatcatcatgaaacattagaaattgcagaagcgtgacttcccacttctgcaattTCTAATGTTT‑CAtgatga                                                                                                                            <  2:951776‑M2/18‑1 (MQ=255)

                                                          aacattcattttgtagatacaaaaattaatcatcatgaaacattagaaattgcagaagcgtgacttcccacttctgcaattTCTAATGTTT‑CAtgatga                                                                                                                            >  1:951776‑M2/82‑99 (MQ=255)

                                                          aaTATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGcc                                                                                  <  1:821920/141‑1 (MQ=255)

                                                             atTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCa                                                                               <  1:777627/141‑1 (MQ=255)

                                                               ttCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCacctcgaaataatt                                                                             >  2:59812/1‑128 (MQ=255)

                                                               ttCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCAtt                                                                             >  1:1501712/1‑141 (MQ=255)

                                                                tCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTGATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTc                                                                            <  1:1641517/141‑1 (MQ=255)

                                                                tCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAAttttgttgatagt                                                                            >  2:895509/1‑131 (MQ=255)

                                                                tCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTc                                                                            >  2:912257/1‑141 (MQ=255)

                                                                tCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTc                                                                            >  2:801175/1‑141 (MQ=255)

                                                                  aTTTGTATTCATTAACTTTCAATTACGCGTAGTAAATTGAATTGCAGAAGCGTGACTTCTCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCAc                                                                          >  2:419597/1‑141 (MQ=255)

                                                                  aTTTGTATTCATTAACTTTATATTACTCTTAGTAAATTGAATTGCAGAAGCGTGACTTCTCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATTTTTGCCAATTTCGCCTCATTCAc                                                                          >  2:419666/1‑141 (MQ=255)

                                                                  aTTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCAc                                                                          >  1:779387/1‑141 (MQ=255)

                                                                  aTTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCAc                                                                          <  1:1500941/141‑1 (MQ=255)

                                                                       tATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTta                                                                     >  2:754673/1‑141 (MQ=255)

                                                                           cATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGCCTTCCCACTTCTGCAATTTCTAATGTTT‑CAAGATGATTAATTTTTGTATTTACAAAATGAATGTTTGCCAATTTCGCGTCATTCACTTTattata                                                                 >  1:890459/1‑141 (MQ=255)

                                                                             ttAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGt                                                               <  2:278373/141‑1 (MQ=255)

                                                                              tAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGtt                                                              >  2:400477/1‑141 (MQ=255)

                                                                              tAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGtt                                                              >  2:485467/1‑141 (MQ=255)

                                                                                aCTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTaa                                                            <  1:794836/141‑1 (MQ=255)

                                                                                   ttATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCa                                                         <  1:1205729/141‑1 (MQ=255)

                                                                                     atatTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCTCCTCATTCACTTTTATATAGTTATGCAcc                                                       >  2:250267/1‑141 (MQ=255)

                                                                                     atatTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCa                                                         >  2:80933/1‑139 (MQ=255)

                                                                                     atatTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCAcc                                                       >  2:125827/1‑141 (MQ=255)

                                                                                      tatTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCAccc                                                      <  1:1065737/141‑1 (MQ=255)

                                                                                      tatTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCAccc                                                      >  1:512856/1‑141 (MQ=255)

                                                                                       tcatcatgaaacattagaAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGtt                                                                                               >  1:951776‑M1/19‑99 (MQ=255)

                                                                                       tcatcatgaaacattagaAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGtt                                                                                               <  2:951776‑M1/81‑1 (MQ=255)

                                                                                          aCGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAAc                                                  >  1:1266758/1‑141 (MQ=255)

                                                                                           cGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACt                                                 >  2:177207/1‑141 (MQ=255)

                                                                                             cTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGc                                               <  2:1266758/141‑1 (MQ=255)

                                                                                               tAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCaa                                             <  1:187580/141‑1 (MQ=255)

                                                                                                       tgaattgCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGAc                                     >  2:65720/1‑141 (MQ=255)

                                                                                                        gaattgCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATAcgc                                        <  2:1500158/137‑1 (MQ=255)

                                                                                                        gaattgCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACt                                    >  1:231949/1‑141 (MQ=255)

                                                                                                        gaattgCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACt                                    <  1:928120/141‑1 (MQ=255)

                                                                                                            tgcagaagtgggaagtcacgcttctgcaattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTaaa                                >  1:1466294‑M2/32‑141 (MQ=255)

                                                                                                             GCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAg                                                                <  2:1263090‑M1/108‑1 (MQ=255)

                                                                                                             GCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAAt                               <  1:1520298‑M1/141‑1 (MQ=255)

                                                                                                               AGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAGCTGCAATACGCGACTTAAATCg                             >  1:346348‑M1/1‑141 (MQ=255)

                                                                                                                    cGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATAtt                        >  1:1145768/1‑141 (MQ=255)

                                                                                                                     gggaagtcacgcttctgcaattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTg                       >  2:79689‑M2/23‑141 (MQ=255)

                                                                                                                       gACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGaa                     <  1:747407/141‑1 (MQ=255)

                                                                                                                        aCTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCa                                                         <  2:251081/104‑1 (MQ=255)

                                                                                                                        aCTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGaaa                    >  2:523706/1‑141 (MQ=255)

                                                                                                                           tCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAg                 <  2:1463124/141‑1 (MQ=255)

                                                                                                                              cACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTaa              >  2:446011/1‑141 (MQ=255)

                                                                                                                                   ctgcaattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAACAAGTAAATAtt         >  1:809840‑M2/9‑141 (MQ=255)

                                                                                                                                   ctgcaattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATAtt         >  2:78859‑M2/9‑141 (MQ=255)

                                                                                                                                    tgcaattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTc        >  1:588458‑M2/8‑141 (MQ=255)

                                                                                                                                    tgcaattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTc        <  1:79689‑M2/134‑1 (MQ=255)

                                                                                                                                      caattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCaa      <  1:284911‑M2/136‑1 (MQ=255)

                                                                                                                                      caattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCaa      <  1:6980‑M2/136‑1 (MQ=255)

                                                                                                                                       aattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAAt     <  1:1629226‑M2/137‑1 (MQ=255)

                                                                                                                                         ttTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATaa   >  1:1614231‑M2/3‑141 (MQ=255)

                                                                                                                                         ttTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATaa   <  1:347637‑M2/139‑1 (MQ=255)

CACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATAAA  >  CP000730/1533761‑1534039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.