Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 2,680,123 A→T 5.1% intergenic (+175/+357) cbpD → / ← USA300HOU_2537 possible secretory antigen/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,680,1230AT 5.1% 526.1 / 12.8 156intergenic (+175/+357)cbpD/USA300HOU_2537possible secretory antigen/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (73/75);  new base T (4/4);  total (77/79)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01

Only 100 of 162 total aligned reads displayed.

GTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATG  >  CP000730/2679984‑2680263
                                                                                                                                           |                                                                                                                                              
gTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCtat                                                                                                                                               <  2:720403/141‑1 (MQ=255)
   tGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCtattat                                                                                                                                            >  1:683928/1‑141 (MQ=255)
     cgagtgATAGAAGTTGTTATTTTATGAAATTATATTATGACTTCTACAAATTTCAAATTGTCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTACCATCGTCTATATATATACTTTTATGCTATTAttt                                                                                                                                          >  2:1478915/4‑141 (MQ=255)
     cGTGTGATAGAAGTTTTTTTTTTTTTTTTTTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTAttt                                                                                                                                          >  2:37237/1‑141 (MQ=255)
             aGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAAtt                                                                                                                                  <  2:1651388/141‑1 (MQ=255)
               atgTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCg                                                                                                                                <  2:920033/139‑1 (MQ=255)
               aaGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCg                                                                                                                                >  1:594668/1‑141 (MQ=255)
                aGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGc                                                                                                                               <  2:1193294/141‑1 (MQ=255)
                 gTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCt                                                                                                                              <  1:1357284/141‑1 (MQ=255)
                  tttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCta                                                                                                                             >  1:1229057/1‑141 (MQ=255)
                    tttattttatGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCtata                                                                                                                           >  1:297104/1‑141 (MQ=255)
                    tttattttatGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCtata                                                                                                                           >  2:198573/1‑141 (MQ=255)
                        ttttatGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACtt                                                                                                                       >  2:658208/1‑141 (MQ=255)
                         tttatGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTa                                                                                                                      <  1:1471893/141‑1 (MQ=255)
                            atGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACa                                                                                                                   >  1:587755/1‑141 (MQ=255)
                             tGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACAt                                                                                                                  >  2:461370/1‑141 (MQ=255)
                             tGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACAt                                                                                                                  >  2:1293334/1‑141 (MQ=255)
                               aaaTTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATAc                                                                                                                <  2:1572499/141‑1 (MQ=255)
                               aaaTTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATAc                                                                                                                <  2:1272913/141‑1 (MQ=255)
                                aaTTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACg                                                                                                               <  1:252958/141‑1 (MQ=255)
                                  ttatattatTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGtt                                                                                                             >  1:1578654/1‑141 (MQ=255)
                                  ttatattatTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGtt                                                                                                             >  2:1043848/1‑141 (MQ=255)
                                      attattACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCg                                                                                                         >  1:1510687/1‑141 (MQ=255)
                                         attaCTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGata                                                                                                      <  1:1268594/141‑1 (MQ=255)
                                         attaCTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATCCGCTATAACTTAACATACGTTTTCGata                                                                                                      <  2:53072/141‑1 (MQ=255)
                                           taCTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGAtata                                                                                                    <  2:1153046/141‑1 (MQ=255)
                                           taCTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGAtata                                                                                                    >  1:1246966/1‑141 (MQ=255)
                                             cTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATaaa                                                                                                  >  2:1532943/1‑141 (MQ=255)
                                                     aaTTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTc                                                                                          <  1:636426/141‑1 (MQ=255)
                                                      aTTTCACATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCt                                                                                         <  1:91363/141‑1 (MQ=255)
                                                            aaTTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAAtct                                                                                   >  1:108409/1‑141 (MQ=255)
                                                             aTTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAAtctc                                                                                  <  2:594490/141‑1 (MQ=255)
                                                              ttGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑a                                                                                <  2:204644/141‑1 (MQ=255)
                                                               tGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑aa                                                                               <  2:253245/141‑1 (MQ=255)
                                                               tGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑aa                                                                               >  1:563686/1‑141 (MQ=255)
                                                                gCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATCTATAAAATTTTATGCTATTATTTCAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑aat                                                                              <  1:1243082/141‑1 (MQ=255)
                                                                     aaTTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAAttt                                                                         <  2:274213/141‑1 (MQ=255)
                                                                         gAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAATCTTGTTCTAACTCTC‑AATAATTTTTTg                                                                     >  2:969800/1‑141 (MQ=255)
                                                                         gAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTg                                                                     >  2:235035/1‑141 (MQ=255)
                                                                          aaCGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGc                                                                    >  1:95524/1‑141 (MQ=255)
                                                                          aaCGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGc                                                                    <  2:971211/141‑1 (MQ=255)
                                                                            cGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTg                                                                  >  1:562984/1‑141 (MQ=255)
                                                                              tataTTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑tt                                                               >  1:1433372/1‑141 (MQ=255)
                                                                               atatTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑ttt                                                              >  1:454756/1‑141 (MQ=255)
                                                                                tatTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑tttt                                                             <  1:1092560/141‑1 (MQ=255)
                                                                                tatTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑tttt                                                             >  1:373781/1‑141 (MQ=255)
                                                                                tatTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑tttt                                                             <  1:487667/141‑1 (MQ=255)
                                                                                   ttcttcttcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCAt                                                          >  2:1020529/1‑141 (MQ=255)
                                                                                   ttcttcttcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCAt                                                          >  2:715078/1‑141 (MQ=255)
                                                                                    tcttcttcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATc                                                         <  2:108409/141‑1 (MQ=255)
                                                                                     cttcttcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCg                                                        <  1:497559/141‑1 (MQ=255)
                                                                                        cttcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCa                                                     >  2:1593048/1‑141 (MQ=255)
                                                                                          tcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCAtt                                                   >  2:839971/1‑141 (MQ=255)
                                                                                             aCTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTaaa                                                <  2:899505/141‑3 (MQ=255)
                                                                                             aCTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGt                                                <  1:296429/141‑1 (MQ=255)
                                                                                                  tattTCATCTTTATCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACTTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTaaaa                                           <  1:81572/141‑1 (MQ=255)
                                                                                                    tttCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTaaaaaa                                         >  2:407730/1‑141 (MQ=255)
                                                                                                     ttCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTACATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAGTCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTaaaaaaa                                        >  2:11664/1‑141 (MQ=255)
                                                                                                       cATCTTCAGCATCGTCTAAGTTTAAAATTTTATGCTTTTGTTTAAGCAATCCACCATAACTTAACATACGTTTTCAATACAAACCTTTTTCTAAATCACTTACAATTTCTTGATGTTTTTCGTCGTCATCAGTTaaaaagt                                        <  2:1505785/141‑3 (MQ=255)
                                                                                                        aTCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAaataa                                     >  1:558201/1‑141 (MQ=255)
                                                                                                         tCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAaataat                                    >  1:476960/1‑141 (MQ=255)
                                                                                                         tCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAaataat                                    >  1:304521/1‑141 (MQ=255)
                                                                                                            ttAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATGCGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAGTTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTa                                 <  2:580602/141‑1 (MQ=255)
                                                                                                             tAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCa                                                           <  1:715039/114‑1 (MQ=255)
                                                                                                             tAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTaa                                >  2:1162305/1‑141 (MQ=255)
                                                                                                              aGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAAc                               <  2:1451932/141‑1 (MQ=255)
                                                                                                              aGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAAc                               <  1:715078/141‑1 (MQ=255)
                                                                                                               gCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACt                              >  2:213103/1‑141 (MQ=255)
                                                                                                                cATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTg                             >  1:213931/1‑141 (MQ=255)
                                                                                                                cATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTg                             <  1:355287/141‑1 (MQ=255)
                                                                                                                    aTCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGAAAAAAAAAAAAAAAATAATTTAACTGAGtt                         <  2:1383180/141‑1 (MQ=255)
                                                                                                                     tCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGttt                        >  1:607231/1‑141 (MQ=255)
                                                                                                                     tCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGttt                        <  1:214138/141‑1 (MQ=255)
                                                                                                                      ctaagtttaAAATTTTATGTTTTTGTTTAAGCAATCCACCATAACTTAACATACGTTTTCGATACAAACCTTTTTCTa                                                                                        >  1:1154241/8‑78 (MQ=255)
                                                                                                                         tatataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTga                    >  2:449008/1‑141 (MQ=255)
                                                                                                                         tatataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTga                    <  2:726464/141‑1 (MQ=255)
                                                                                                                          atataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTgag                   <  1:1507819/141‑1 (MQ=255)
                                                                                                                           tataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTgaga                  <  2:1450327/141‑1 (MQ=255)
                                                                                                                            ataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGAc                 <  2:1246966/141‑1 (MQ=255)
                                                                                                                             taAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGAcc                <  1:773464/141‑1 (MQ=255)
                                                                                                                              aaaaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTgagtctt               >  2:626772/1‑137 (MQ=255)
                                                                                                                              aaaaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCt               >  1:250944/1‑141 (MQ=255)
                                                                                                                              aaaaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCt               >  2:865275/1‑141 (MQ=255)
                                                                                                                               aaaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTg              >  1:916343/1‑141 (MQ=255)
                                                                                                                               aaaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTg              <  2:1651762/141‑1 (MQ=255)
                                                                                                                                aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt             <  1:1456019/141‑1 (MQ=255)
                                                                                                                                aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt             <  2:952797/141‑1 (MQ=255)
                                                                                                                                aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt             <  1:488970/141‑1 (MQ=255)
                                                                                                                                aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt             <  1:1010416/141‑1 (MQ=255)
                                                                                                                                aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt             <  1:865275/141‑1 (MQ=255)
                                                                                                                                aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt             <  1:636682/141‑1 (MQ=255)
                                                                                                                                 aTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTCAAAAAATAATTTAACTGAGTTTTTGAGACCTGtt            >  2:989531/1‑141 (MQ=255)
                                                                                                                                 aTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGtt            <  1:1428489/141‑1 (MQ=255)
                                                                                                                                 aTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGtt            <  2:607231/141‑1 (MQ=255)
                                                                                                                                 aTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGtt            >  1:1482200/1‑141 (MQ=255)
                                                                                                                                     tATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTaaa        >  2:106495/1‑141 (MQ=255)
                                                                                                                                      aTGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAAt       >  1:1009418/1‑141 (MQ=255)
                                                                                                                                       tGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAAtt      >  1:367204/1‑141 (MQ=255)
                                                                                                                                        gCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATtg     <  2:1522368/141‑1 (MQ=255)
                                                                                                                                           attattTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATtgatg  >  2:1216465/1‑141 (MQ=255)
                                                                                                                                           |                                                                                                                                              
GTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTGCTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATG  >  CP000730/2679984‑2680263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑