Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 2,680,137 T→C 5.4% intergenic (+189/+343) cbpD → / ← USA300HOU_2537 possible secretory antigen/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,680,1370TC 5.4% 511.6 / 10.6 160intergenic (+189/+343)cbpD/USA300HOU_2537possible secretory antigen/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (74/77);  new base C (4/5);  total (78/82)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 167 total aligned reads displayed.

AGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTA  >  CP000730/2679997‑2680277
                                                                                                                                            |                                                                                                                                                
  atgTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCg                                                                                                                                                <  2:920033/139‑1 (MQ=255)
  aaGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCg                                                                                                                                                >  1:594668/1‑141 (MQ=255)
   aGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGc                                                                                                                                               <  2:1193294/141‑1 (MQ=255)
   aGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGc                                                                                                                                               <  2:1054490/141‑1 (MQ=255)
     tttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCta                                                                                                                                             <  1:252618/141‑1 (MQ=255)
     tttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCta                                                                                                                                             >  1:1229057/1‑141 (MQ=255)
       tttattttatGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCtata                                                                                                                                           >  2:198573/1‑141 (MQ=255)
       tttattttatGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCtata                                                                                                                                           >  1:297104/1‑141 (MQ=255)
           ttttatGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACtt                                                                                                                                       >  2:658208/1‑141 (MQ=255)
              tatGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAAc                                                                                                                                    >  1:220730/1‑141 (MQ=255)
               atGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACa                                                                                                                                   >  1:587755/1‑141 (MQ=255)
                tGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACAt                                                                                                                                  >  2:1293334/1‑141 (MQ=255)
                tGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACAt                                                                                                                                  >  2:461370/1‑141 (MQ=255)
                 gAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATa                                                                                                                                 <  2:557444/141‑1 (MQ=255)
                  aaaTTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTTAACGTATATTTCTTCTTCAACTATTCTTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTCACCTAc                                                                                                                                <  2:400880/141‑1 (MQ=255)
                  aaaTTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATAc                                                                                                                                <  2:1572499/141‑1 (MQ=255)
                  aaaTTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATAc                                                                                                                                <  2:965330/141‑1 (MQ=255)
                   aaTTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACg                                                                                                                               <  1:252958/141‑1 (MQ=255)
                     ttatattatTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGtt                                                                                                                             >  1:1578654/1‑141 (MQ=255)
                     ttatattatTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGtt                                                                                                                             >  2:1043848/1‑141 (MQ=255)
                      tatattatTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGttt                                                                                                                            <  2:886935/141‑1 (MQ=255)
                        tattatTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTc                                                                                                                          >  1:1280153/1‑141 (MQ=255)
                          ttattaCTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGa                                                                                                                        >  1:924036/1‑141 (MQ=255)
                            attaCTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGata                                                                                                                      <  1:1268594/141‑1 (MQ=255)
                              taCTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGAtata                                                                                                                    <  2:1153046/141‑1 (MQ=255)
                              taCTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGAtata                                                                                                                    <  1:1439507/141‑1 (MQ=255)
                                      cAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGt                                                                                                            >  1:147172/1‑141 (MQ=255)
                                        aaTTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTc                                                                                                          <  1:636426/141‑1 (MQ=255)
                                         aTTTCACATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCt                                                                                                         <  1:91363/141‑1 (MQ=255)
                                               aaTTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAAtct                                                                                                   >  1:1143242/1‑141 (MQ=255)
                                               aaTTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAAtct                                                                                                   <  1:483806/141‑1 (MQ=255)
                                                aTTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAAtctc                                                                                                  >  1:68581/1‑141 (MQ=255)
                                                aTTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAAtctc                                                                                                  <  2:594490/141‑1 (MQ=255)
                                                 ttGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑a                                                                                                <  2:204644/141‑1 (MQ=255)
                                                  tGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑a‑a                                                                                              <  2:253245/141‑1 (MQ=255)
                                                    ccGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑a‑ata                                                                                            <  1:375561/141‑1 (MQ=255)
                                                     cGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑a‑ataa                                                                                           <  1:1246575/141‑1 (MQ=255)
                                                        aaTTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAAttt                                                                                        <  2:274213/141‑1 (MQ=255)
                                                          ttGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAAttttt                                                                                      >  2:1617949/1‑141 (MQ=255)
                                                           tGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAAtttttt                                                                                     <  1:557997/141‑1 (MQ=255)
                                                            gAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTg                                                                                    >  2:235035/1‑141 (MQ=255)
                                                             aaCGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑c                                                                                  >  1:95524/1‑141 (MQ=255)
                                                             aaCGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑c                                                                                  <  2:971211/141‑1 (MQ=255)
                                                               cGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTg                                                                                >  1:562984/1‑141 (MQ=255)
                                                                 tataTTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑tt                                                                             >  1:1433372/1‑141 (MQ=255)
                                                                   tatTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑tttt                                                                           <  1:1092560/141‑1 (MQ=255)
                                                                   tatTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑tttt                                                                           >  1:373781/1‑141 (MQ=255)
                                                                   tatTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑tttt                                                                           <  1:487667/141‑1 (MQ=255)
                                                                       tcttcttcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATc                                                                       <  2:108409/141‑1 (MQ=255)
                                                                           cttcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCa                                                                   >  2:1593048/1‑141 (MQ=255)
                                                                             tcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCAtt                                                                 >  2:839971/1‑141 (MQ=255)
                                                                              cAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACTTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTa                                                                >  1:1544100/1‑141 (MQ=255)
                                                                              cAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTa                                                                >  1:1384552/1‑141 (MQ=255)
                                                                              cAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTa                                                                >  2:1525828/1‑141 (MQ=255)
                                                                               aaCTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAg                                                               >  2:467603/1‑141 (MQ=255)
                                                                                aCTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTaaa                                                              <  2:899505/141‑3 (MQ=255)
                                                                                aCTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGt                                                              <  1:296429/141‑1 (MQ=255)
                                                                                     tattTCATCTTTATCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACTTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTaaaa                                                         <  1:81572/141‑1 (MQ=255)
                                                                                        ttCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTACATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAGTCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTaaaaaaa                                                      >  2:11664/1‑141 (MQ=255)
                                                                                          cATCTTCAGCATCGTCTAAGTTTAAAATTTTATGCTTTTGTTTAAGCAATCCACCATAACTTAACATACGTTTTCAATACAAACCTTTTTCTAAATCACTT‑ACAATTTCTTG‑ATGTTTTTCGTCGTCATCAGTTaaaaagt                                                      <  2:1505785/141‑3 (MQ=255)
                                                                                           aTCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAaataa                                                   >  1:558201/1‑141 (MQ=255)
                                                                                            tCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAaataat                                                  >  1:304521/1‑141 (MQ=255)
                                                                                               ttAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATGCGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAGTTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTa                                               <  2:580602/141‑1 (MQ=255)
                                                                                                tAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCa                                                                         >  2:715039/1‑114 (MQ=255)
                                                                                                 aGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAAc                                             <  2:1451932/141‑1 (MQ=255)
                                                                                                 aGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAAc                                             <  1:715078/141‑1 (MQ=255)
                                                                                                  gCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACt                                            >  2:213103/1‑141 (MQ=255)
                                                                                                   cATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTg                                           >  1:213931/1‑141 (MQ=255)
                                                                                                       aTCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGAAAAAAAAAAAAAAAATAATTTAACTGAGtt                                       <  2:1383180/141‑1 (MQ=255)
                                                                                                        tCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGttt                                      >  1:607231/1‑141 (MQ=255)
                                                                                                         ctaagtttaAAATTTTATGTTTTTGTTTAAGCAATCCACCATAACTTAACATACGTTTTCGATACAAACCTTTTTCTa                                                                                                        <  2:1154241/71‑1 (MQ=255)
                                                                                                            tatataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTga                                  <  2:726464/141‑1 (MQ=255)
                                                                                                            tatataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTga                                  <  2:726363/141‑1 (MQ=255)
                                                                                                             atataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTgag                                 <  1:1507819/141‑1 (MQ=255)
                                                                                                              tataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTgaga                                <  1:366507/141‑1 (MQ=255)
                                                                                                              tataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTgaga                                <  2:1450327/141‑1 (MQ=255)
                                                                                                               ataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGAc                               <  2:1246966/141‑1 (MQ=255)
                                                                                                                taAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGAcc                              <  1:773464/141‑1 (MQ=255)
                                                                                                                 aaaaTTTTATGTTTTTGTTTAAGCAATCCACCATAACTTAACATACGTTTTCGATACAAACCTTTTTCTAAATCAC‑TTACAATTTCTTGATTT‑TTTTCATCATCATCAGTTaaaaaatca                                                    >  2:634358/1‑117 (MQ=255)
                                                                                                                  aaaTTTTATGCTTTTGTTTAAGCAATCCACCATAACTTAACATACGTTTTCGATACAAACCtt                                                                                                              <  1:972062/63‑1 (MQ=255)
                                                                                                                  aaaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTg                            <  2:1651762/141‑1 (MQ=255)
                                                                                                                   aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt                           <  1:636682/141‑1 (MQ=255)
                                                                                                                   aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt                           <  1:865275/141‑1 (MQ=255)
                                                                                                                   aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt                           <  2:952797/141‑1 (MQ=255)
                                                                                                                   aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt                           <  1:1010416/141‑1 (MQ=255)
                                                                                                                   aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt                           <  1:488970/141‑1 (MQ=255)
                                                                                                                    aTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTCAAAAAATAATTTAACTGAGTTTTTGAGACCTGtt                          >  2:989531/1‑141 (MQ=255)
                                                                                                                    aTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGtt                          >  1:1482200/1‑141 (MQ=255)
                                                                                                                    aTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGtt                          <  2:607231/141‑1 (MQ=255)
                                                                                                                         aTGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAAt                     >  1:1009418/1‑141 (MQ=255)
                                                                                                                           gCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATtg                   <  2:1522368/141‑1 (MQ=255)
                                                                                                                              attattTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATtgatg                >  2:1216465/1‑141 (MQ=255)
                                                                                                                              attattTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATtgatg                <  2:437816/141‑1 (MQ=255)
                                                                                                                                  tttAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTc            <  1:839971/141‑1 (MQ=255)
                                                                                                                                   ttAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCa           <  1:467603/141‑1 (MQ=255)
                                                                                                                                    tAAATAATTCGCTATAACTTAACATACGTTTTCGATAGAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATAGTAATGAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCaa          >  1:1194630/1‑141 (MQ=255)
                                                                                                                                       ataatTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAAc       <  1:1184248/141‑1 (MQ=255)
                                                                                                                                       ataatTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAAc       >  1:1050926/1‑141 (MQ=255)
                                                                                                                                           ttCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCttt   >  2:342827/1‑141 (MQ=255)
                                                                                                                                            tCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCtttt  >  2:1277113/1‑140 (MQ=255)
                                                                                                                                            |                                                                                                                                                
AGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑A‑ATAATTTTTTG‑CTG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTA  >  CP000730/2679997‑2680277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑