Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 2,680,137 T→C 5.4% intergenic (+189/+343) cbpD → / ← USA300HOU_2537 possible secretory antigen/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,680,1370TC 5.4% 511.6 / 10.6 160intergenic (+189/+343)cbpD/USA300HOU_2537possible secretory antigen/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (74/77);  new base C (4/5);  total (78/82)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 167 total aligned reads displayed.

AGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTA  >  CP000730/2679997‑2680277
                                                                                                                                            |                                                                                                                                                
  atgTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCg                                                                                                                                                <  2:920033/139‑1 (MQ=255)
  aaGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCg                                                                                                                                                >  1:594668/1‑141 (MQ=255)
   aGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGc                                                                                                                                               <  2:1193294/141‑1 (MQ=255)
   aGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGc                                                                                                                                               <  2:1054490/141‑1 (MQ=255)
     tttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCta                                                                                                                                             <  1:252618/141‑1 (MQ=255)
     tttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCta                                                                                                                                             >  1:1229057/1‑141 (MQ=255)
       tttattttatGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCtata                                                                                                                                           >  2:198573/1‑141 (MQ=255)
       tttattttatGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCtata                                                                                                                                           >  1:297104/1‑141 (MQ=255)
           ttttatGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACtt                                                                                                                                       >  2:658208/1‑141 (MQ=255)
              tatGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAAc                                                                                                                                    >  1:220730/1‑141 (MQ=255)
               atGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACa                                                                                                                                   >  1:587755/1‑141 (MQ=255)
                tGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACAt                                                                                                                                  >  2:1293334/1‑141 (MQ=255)
                tGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACAt                                                                                                                                  >  2:461370/1‑141 (MQ=255)
                 gAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATa                                                                                                                                 <  2:557444/141‑1 (MQ=255)
                  aaaTTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTTAACGTATATTTCTTCTTCAACTATTCTTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTCACCTAc                                                                                                                                <  2:400880/141‑1 (MQ=255)
                  aaaTTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATAc                                                                                                                                <  2:1572499/141‑1 (MQ=255)
                  aaaTTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATAc                                                                                                                                <  2:965330/141‑1 (MQ=255)
                   aaTTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACg                                                                                                                               <  1:252958/141‑1 (MQ=255)
                     ttatattatTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGtt                                                                                                                             >  1:1578654/1‑141 (MQ=255)
                     ttatattatTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGtt                                                                                                                             >  2:1043848/1‑141 (MQ=255)
                      tatattatTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGttt                                                                                                                            <  2:886935/141‑1 (MQ=255)
                        tattatTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTc                                                                                                                          >  1:1280153/1‑141 (MQ=255)
                          ttattaCTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGa                                                                                                                        >  1:924036/1‑141 (MQ=255)
                            attaCTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGata                                                                                                                      <  1:1268594/141‑1 (MQ=255)
                              taCTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGAtata                                                                                                                    <  2:1153046/141‑1 (MQ=255)
                              taCTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGAtata                                                                                                                    <  1:1439507/141‑1 (MQ=255)
                                      cAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGt                                                                                                            >  1:147172/1‑141 (MQ=255)
                                        aaTTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTc                                                                                                          <  1:636426/141‑1 (MQ=255)
                                         aTTTCACATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCt                                                                                                         <  1:91363/141‑1 (MQ=255)
                                               aaTTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAAtct                                                                                                   >  1:1143242/1‑141 (MQ=255)
                                               aaTTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAAtct                                                                                                   <  1:483806/141‑1 (MQ=255)
                                                aTTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAAtctc                                                                                                  >  1:68581/1‑141 (MQ=255)
                                                aTTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAAtctc                                                                                                  <  2:594490/141‑1 (MQ=255)
                                                 ttGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCa                                                                                                <  2:204644/141‑1 (MQ=255)
                                                  tGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCaa                                                                                              <  2:253245/141‑1 (MQ=255)
                                                    ccGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCaata                                                                                            <  1:375561/141‑1 (MQ=255)
                                                     cGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCaataa                                                                                           <  1:1246575/141‑1 (MQ=255)
                                                        aaTTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAAttt                                                                                        <  2:274213/141‑1 (MQ=255)
                                                          ttGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAAttttt                                                                                      >  2:1617949/1‑141 (MQ=255)
                                                           tGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAAtttttt                                                                                     <  1:557997/141‑1 (MQ=255)
                                                            gAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTg                                                                                    >  2:235035/1‑141 (MQ=255)
                                                             aaCGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGc                                                                                  >  1:95524/1‑141 (MQ=255)
                                                             aaCGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGc                                                                                  <  2:971211/141‑1 (MQ=255)
                                                               cGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTg                                                                                >  1:562984/1‑141 (MQ=255)
                                                                 tataTTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGtt                                                                             >  1:1433372/1‑141 (MQ=255)
                                                                   tatTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGtttt                                                                           <  1:1092560/141‑1 (MQ=255)
                                                                   tatTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGtttt                                                                           >  1:373781/1‑141 (MQ=255)
                                                                   tatTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGtttt                                                                           <  1:487667/141‑1 (MQ=255)
                                                                       tcttcttcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATc                                                                       <  2:108409/141‑1 (MQ=255)
                                                                           cttcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCa                                                                   >  2:1593048/1‑141 (MQ=255)
                                                                             tcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCAtt                                                                 >  2:839971/1‑141 (MQ=255)
                                                                              cAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACTTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTa                                                                >  1:1544100/1‑141 (MQ=255)
                                                                              cAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTa                                                                >  1:1384552/1‑141 (MQ=255)
                                                                              cAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTa                                                                >  2:1525828/1‑141 (MQ=255)
                                                                               aaCTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAg                                                               >  2:467603/1‑141 (MQ=255)
                                                                                aCTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTaaa                                                              <  2:899505/141‑3 (MQ=255)
                                                                                aCTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGt                                                              <  1:296429/141‑1 (MQ=255)
                                                                                     tattTCATCTTTATCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACTTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTaaaa                                                         <  1:81572/141‑1 (MQ=255)
                                                                                        ttCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTACATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAGTCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTaaaaaaa                                                      >  2:11664/1‑141 (MQ=255)
                                                                                          cATCTTCAGCATCGTCTAAGTTTAAAATTTTATGCTTTTGTTTAAGCAATCCACCATAACTTAACATACGTTTTCAATACAAACCTTTTTCTAAATCACTTACAATTTCTTGATGTTTTTCGTCGTCATCAGTTaaaaagt                                                      <  2:1505785/141‑3 (MQ=255)
                                                                                           aTCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAaataa                                                   >  1:558201/1‑141 (MQ=255)
                                                                                            tCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAaataat                                                  >  1:304521/1‑141 (MQ=255)
                                                                                               ttAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATGCGTTTTCGATATAAACCTTGTTCTAAATCTCAATAGTTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTa                                               <  2:580602/141‑1 (MQ=255)
                                                                                                tAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCa                                                                         >  2:715039/1‑114 (MQ=255)
                                                                                                 aGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAAc                                             <  2:1451932/141‑1 (MQ=255)
                                                                                                 aGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAAc                                             <  1:715078/141‑1 (MQ=255)
                                                                                                  gCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACt                                            >  2:213103/1‑141 (MQ=255)
                                                                                                   cATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTg                                           >  1:213931/1‑141 (MQ=255)
                                                                                                       aTCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGAAAAAAAAAAAAAAAATAATTTAACTGAGtt                                       <  2:1383180/141‑1 (MQ=255)
                                                                                                        tCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGttt                                      >  1:607231/1‑141 (MQ=255)
                                                                                                         ctaagtttaAAATTTTATGTTTTTGTTTAAGCAATCCACCATAACTTAACATACGTTTTCGATACAAACCTTTTTCTa                                                                                                        <  2:1154241/71‑1 (MQ=255)
                                                                                                            tatataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTga                                  <  2:726464/141‑1 (MQ=255)
                                                                                                            tatataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTga                                  <  2:726363/141‑1 (MQ=255)
                                                                                                             atataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTgag                                 <  1:1507819/141‑1 (MQ=255)
                                                                                                              tataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTgaga                                <  1:366507/141‑1 (MQ=255)
                                                                                                              tataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTgaga                                <  2:1450327/141‑1 (MQ=255)
                                                                                                               ataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGAc                               <  2:1246966/141‑1 (MQ=255)
                                                                                                                taAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGAcc                              <  1:773464/141‑1 (MQ=255)
                                                                                                                 aaaaTTTTATGTTTTTGTTTAAGCAATCCACCATAACTTAACATACGTTTTCGATACAAACCTTTTTCTAAATCACTTACAATTTCTTGATTTTTTTCATCATCATCAGTTaaaaaatca                                                    >  2:634358/1‑117 (MQ=255)
                                                                                                                  aaaTTTTATGCTTTTGTTTAAGCAATCCACCATAACTTAACATACGTTTTCGATACAAACCtt                                                                                                              <  1:972062/63‑1 (MQ=255)
                                                                                                                  aaaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTg                            <  2:1651762/141‑1 (MQ=255)
                                                                                                                   aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt                           <  1:636682/141‑1 (MQ=255)
                                                                                                                   aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt                           <  1:865275/141‑1 (MQ=255)
                                                                                                                   aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt                           <  2:952797/141‑1 (MQ=255)
                                                                                                                   aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt                           <  1:1010416/141‑1 (MQ=255)
                                                                                                                   aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt                           <  1:488970/141‑1 (MQ=255)
                                                                                                                    aTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTCAAAAAATAATTTAACTGAGTTTTTGAGACCTGtt                          >  2:989531/1‑141 (MQ=255)
                                                                                                                    aTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGtt                          >  1:1482200/1‑141 (MQ=255)
                                                                                                                    aTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGtt                          <  2:607231/141‑1 (MQ=255)
                                                                                                                         aTGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAAt                     >  1:1009418/1‑141 (MQ=255)
                                                                                                                           gCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATtg                   <  2:1522368/141‑1 (MQ=255)
                                                                                                                              attattTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATtgatg                >  2:1216465/1‑141 (MQ=255)
                                                                                                                              attattTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATtgatg                <  2:437816/141‑1 (MQ=255)
                                                                                                                                  tttAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTc            <  1:839971/141‑1 (MQ=255)
                                                                                                                                   ttAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCa           <  1:467603/141‑1 (MQ=255)
                                                                                                                                    tAAATAATTCGCTATAACTTAACATACGTTTTCGATAGAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATAGTAATGAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCaa          >  1:1194630/1‑141 (MQ=255)
                                                                                                                                       ataatTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAAc       <  1:1184248/141‑1 (MQ=255)
                                                                                                                                       ataatTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAAc       >  1:1050926/1‑141 (MQ=255)
                                                                                                                                           ttCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCttt   >  2:342827/1‑141 (MQ=255)
                                                                                                                                            tCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCtttt  >  2:1277113/1‑140 (MQ=255)
                                                                                                                                            |                                                                                                                                                
AGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTCAATAATTTTTTGCTGTTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTA  >  CP000730/2679997‑2680277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: