Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 821,052 T→A 5.4% intergenic (+129/+60) glxK → / ← pepT glycerate kinase/M20 family peptidase T

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730821,0520TA 5.4% 465.5 / 11.8 147intergenic (+129/+60)glxK/pepTglycerate kinase/M20 family peptidase T
Reads supporting (aligned to +/- strand):  ref base T (69/70);  new base A (5/3);  total (74/73)
Fisher's exact test for biased strand distribution p-value = 7.19e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01

Only 100 of 150 total aligned reads displayed.

TTGAGGTTTAGTAAAGAAGGACTAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCATAACATCAATGGATGCATATTC  >  CP000730/820913‑821192
                                                                                                                                            |                                                                                                                                             
ttGAGGTTTAGTAAAGAAGGACTAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGCATGtt                                                                                                                                              >  2:727054/1‑141 (MQ=255)
ttGAGGTTTAGTAAAGAAGGACTAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGtt                                                                                                                                              >  1:81244/1‑141 (MQ=255)
   aGGTTTAGTAAAGAAGGACTAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGc                                                                                                                                           <  2:1482479/141‑1 (MQ=255)
    ggTTTAGTAAAGAAGGACTAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCg                                                                                                                                          <  1:1058645/141‑1 (MQ=255)
    ggTTTAGTAAAGAAGGACTAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCg                                                                                                                                          <  2:160977/141‑1 (MQ=255)
    ggTTTAGTAAAGAAGGACTAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCg                                                                                                                                          <  2:81244/141‑1 (MQ=255)
     gTTTAGTAAAGAAGGACTAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGt                                                                                                                                         <  1:973639/141‑1 (MQ=255)
     gTTTAGTAAAGAAGGACTAAATTGGTGATGCTGNCATNATGGTTAATAACAGTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTNAGCGt                                                                                                                                         >  1:543659/1‑141 (MQ=255)
     gTTTAGTAAAGAAGGAATAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGt                                                                                                                                         <  2:850145/141‑1 (MQ=255)
      tttAGTAAAGAAGGACTAAATTGGTGAGGCTGTCATGATGGTGAATAACATTTATGATGGTTAGAAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTg                                                                                                                                        <  2:513313/141‑1 (MQ=255)
       ttAGTAAAGAAGGGCTAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTAACATTCAGTGCAATGATAGCGTGa                                                                                                                                       <  1:635428/141‑1 (MQ=38)
       ttAGTAAAGAAGGACTAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGa                                                                                                                                       >  2:71126/1‑141 (MQ=255)
         aGTAAAGAAGGACTAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGAtt                                                                                                                                     >  1:94511/1‑141 (MQ=255)
            aaaGAAGGACTAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGAttttt                                                                                                                                  <  1:1337997/141‑1 (MQ=255)
             aagaagGAATGTATTGGTGATGCTGTCATGATGGTGAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTta                                                                                                                                <  2:243859/141‑1 (MQ=255)
              agaagGACTAAATTGCTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTtat                                                                                                                               <  1:1377636/141‑1 (MQ=255)
               gaagGACTAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTtata                                                                                                                              >  2:914280/1‑141 (MQ=255)
               gaagGACTAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTAACATTCAGTGCAATGATAGCGTGAtttttcat                                                                                                                               <  1:861406/141‑4 (MQ=37)
                aagGACTAAATTGGTGATGCTGACATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTtatat                                                                                                                             <  2:924247/141‑1 (MQ=255)
                    aCTAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAGACGAATTAGAAGATCGAAAGTGTACGTAAAAAATATGAAAAATCACGCTCTCATAGCACTGAACGTTAGCGTGATTTTTATATatta                                                                                                                         >  2:795717/1‑141 (MQ=255)
                       aaaTTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAACGTGATTTTTATATattaatt                                                                                                                      >  2:131926/1‑141 (MQ=255)
                        aaTTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATattaatta                                                                                                                     <  1:637118/141‑1 (MQ=255)
                        aaTTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATattaatta                                                                                                                     >  2:1549997/1‑141 (MQ=255)
                            ggTGATGCTGTCATTATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGcc                                                                                                                 <  1:1397265/141‑1 (MQ=255)
                              tGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTg                                                                                                               >  2:975517/1‑141 (MQ=255)
                              tGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTg                                                                                                               >  1:680806/1‑141 (MQ=255)
                               gATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGa                                                                                                              <  2:1573541/141‑1 (MQ=255)
                                 tGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGt                                                                                                            >  2:528639/1‑141 (MQ=255)
                                 tGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGt                                                                                                            <  2:798399/141‑1 (MQ=255)
                                        atgatgGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGACAGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTa                                                                                                     >  1:1263799/1‑141 (MQ=255)
                                         tgatgGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAg                                                                                                    <  2:657861/141‑1 (MQ=255)
                                             ggTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGtata                                                                                                <  2:205763/141‑1 (MQ=255)
                                               ttAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGtatata                                                                                              >  2:1201402/1‑141 (MQ=255)
                                               ttAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGtatata                                                                                              <  2:973251/141‑1 (MQ=255)
                                                taataaCATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATaa                                                                                             <  1:528639/141‑1 (MQ=255)
                                                taataaCATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATaa                                                                                             <  2:138129/141‑1 (MQ=255)
                                                  ataaCATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAACTCACGCTATCCTTGCACTGAATATAAGAGTGATATTTATATATTAATTAAGCCTGCGTTGAACTAGTATATAATc                                                                                           >  1:1485371/1‑141 (MQ=255)
                                                  ataaCATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATc                                                                                           <  2:612069/141‑1 (MQ=255)
                                                  ataaCATTTATGATGGTTAGCAAAACGAATTAGAACATCGAAAGTAGACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATc                                                                                           >  1:1447139/1‑141 (MQ=255)
                                                    aaCATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGt                                                                                         <  1:1565738/141‑1 (MQ=255)
                                                    aaCATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCCGAGTTGAACTAGTATATAATCGt                                                                                         <  1:1334087/141‑1 (MQ=255)
                                                      cATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTg                                                                                       >  2:229850/1‑141 (MQ=255)
                                                       agttATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTgg                                                                                      >  2:508799/3‑141 (MQ=255)
                                                       aTTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTgg                                                                                      <  2:301474/141‑1 (MQ=255)
                                                          tATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGttt                                                                                   >  1:1236069/1‑141 (MQ=255)
                                                          tATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGttt                                                                                   <  1:1251646/141‑1 (MQ=255)
                                                          tATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGttt                                                                                   <  2:247022/141‑1 (MQ=255)
                                                            tgatgGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGttttt                                                                                 <  2:825546/141‑1 (MQ=255)
                                                            tgatgGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGttttt                                                                                 >  1:786160/1‑141 (MQ=255)
                                                             gatgGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTa                                                                                >  2:1617414/1‑141 (MQ=255)
                                                                      cAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTc                                                                       <  2:627553/141‑1 (MQ=255)
                                                                        aaaCGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAg                                                                     <  2:194541/141‑1 (MQ=255)
                                                                        aaaCGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAg                                                                     <  1:1624008/141‑1 (MQ=255)
                                                                        aaaCGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAg                                                                     >  2:147456/1‑141 (MQ=255)
                                                                             aaTTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGata                                                                >  1:645618/1‑141 (MQ=255)
                                                                                tAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATAtct                                                             >  2:281463/1‑141 (MQ=255)
                                                                                  gaagaTCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATAtcttc                                                           >  1:261550/1‑141 (MQ=255)
                                                                                     gaTCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTAc                                                        <  2:1211869/141‑1 (MQ=255)
                                                                                     gaTCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTAc                                                        <  1:1321983/141‑1 (MQ=255)
                                                                                     gaTCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATAAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATAtcttcttc                                                        >  2:879577/1‑139 (MQ=255)
                                                                                       tCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACaa                                                      >  1:462391/1‑141 (MQ=255)
                                                                                       tCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACaa                                                      >  1:18675/1‑141 (MQ=255)
                                                                                        cGAAAGTATACGTAAAAAATATGAAAAATCAGGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATAtcttc                                                           >  2:742092/1‑135 (MQ=255)
                                                                                        cGAAAGTATACGTAAAAAATATGAAAAATCAGGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATAtcttc                                                           <  1:742092/135‑1 (MQ=255)
                                                                                           aaGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTcc                                                  >  1:727525/1‑141 (MQ=255)
                                                                                              tataCGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAAt                                               >  2:740807/1‑141 (MQ=255)
                                                                                                taCGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGa                                             <  2:637678/141‑1 (MQ=255)
                                                                                                   gTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTa                                          >  2:1180817/1‑141 (MQ=255)
                                                                                                         aaTATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGa                                             <  1:203897/132‑1 (MQ=255)
                                                                                                         aaTATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTa                                    <  1:1279347/141‑1 (MQ=255)
                                                                                                         aaTATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTTTATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTTGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACt                                  <  2:938610/141‑1 (MQ=255)
                                                                                                          atatGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTAc                                   <  1:866765/141‑1 (MQ=255)
                                                                                                            atGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTg                                 >  1:601251/1‑141 (MQ=255)
                                                                                                             tGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCaa                                                <  2:311855/125‑1 (MQ=255)
                                                                                                             tGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGc                                >  1:1143369/1‑141 (MQ=255)
                                                                                                             tGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGc                                >  2:274574/1‑141 (MQ=255)
                                                                                                             tGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGc                                <  1:1531378/141‑1 (MQ=255)
                                                                                                              gAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCt                               >  1:354130/1‑141 (MQ=255)
                                                                                                              gAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCt                               >  2:1317879/1‑141 (MQ=255)
                                                                                                              gAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCATTGGTTTTTAGTGATTTTCAGCGATATCTTCTACGATTCCAATGATTACTTGTACTGCt                               >  1:432281/1‑141 (MQ=255)
                                                                                                                  aaTCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCttttt                           <  2:498831/141‑1 (MQ=255)
                                                                                                                  aaTCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCttttt                           <  2:1445294/141‑1 (MQ=255)
                                                                                                                     cACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGACTTTCAGCGCTATCTTCTACACTTCCAATGATTACTTGTACTGCTTTTTCCa                        <  2:414343/141‑1 (MQ=255)
                                                                                                                      aCGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATCTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCAt                       <  1:613490/141‑1 (MQ=255)
                                                                                                                       cGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCATa                      >  1:1121676/1‑141 (MQ=255)
                                                                                                                       cGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCATa                      >  2:406797/1‑141 (MQ=255)
                                                                                                                       cGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCATa                      >  2:1592561/1‑141 (MQ=255)
                                                                                                                        gCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCATaa                     >  1:1012600/1‑141 (MQ=255)
                                                                                                                        gCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCATaa                     >  1:1454308/1‑141 (MQ=255)
                                                                                                                        gCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCATaa                     <  1:27363/141‑1 (MQ=255)
                                                                                                                        gCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCATaa                     >  2:1381576/1‑141 (MQ=255)
                                                                                                                         cTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCATAAc                    <  1:147456/141‑1 (MQ=255)
                                                                                                                              aTTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCATAACATCaa               <  2:1232296/141‑1 (MQ=255)
                                                                                                                                 tcagtgcaaTGATAGCGTGATTTTTCATATTTTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCATAACATCAAt              >  1:1076367/8‑141 (MQ=255)
                                                                                                                                   aCTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCATAACATCAATGGAt          >  2:910398/1‑141 (MQ=255)
                                                                                                                                     tGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAGTTCCAATGATTACTTGTACTGCTTTTTCCATAACATCAATGGATGc        <  1:1637674/141‑1 (MQ=255)
                                                                                                                                         aTGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCATAACATCAATGGATGCata     >  1:1095976/1‑141 (MQ=255)
                                                                                                                                         aTGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCATAACATCAATGGATGCata     >  1:479859/1‑141 (MQ=255)
                                                                                                                                         aTGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCCTTTTCCATAACATCAATGGATGCata     >  2:1417505/1‑141 (MQ=255)
                                                                                                                                            ttAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCATAACATCAATGGATGCATATTc  >  1:1105303/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                             
TTGAGGTTTAGTAAAGAAGGACTAAATTGGTGATGCTGTCATGATGGTTAATAACATTTATGATGGTTAGCAAAACGAATTAGAAGATCGAAAGTATACGTAAAAAATATGAAAAATCACGCTATCATTGCACTGAATGTTAGCGTGATTTTTATATATTAATTAAGCCTGAGTTGAACTAGTATATAATCGTTGGTTTTTAGTGATTTTCAGCGATATCTTCTACAATTCCAATGATTACTTGTACTGCTTTTTCCATAACATCAATGGATGCATATTC  >  CP000730/820913‑821192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: