mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 41 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 1,929,842 | 0 | T | . | 71.4% | 20.9 / 14.6 | 14 | intergenic (‑925/‑243) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,843 | 0 | A | . | 71.4% | 19.8 / 15.7 | 14 | intergenic (‑926/‑242) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,848 | 0 | C | A | 71.4% | 11.7 / 11.0 | 14 | intergenic (‑931/‑237) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,867 | 0 | G | T | 71.4% | 8.1 / 10.9 | 14 | intergenic (‑950/‑218) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,866 | 0 | G | T | 69.2% | 6.9 / 11.0 | 14 | intergenic (‑949/‑219) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 36,124 | 0 | G | A | 64.4% | 30.9 / 59.6 | 59 | A143V (GCT→GTT) | tpn | IS431mec transposase |
| * | CP000730 | 1,929,862 | 1 | . | T | 64.3% | 28.1 / 16.9 | 14 | intergenic (‑945/‑223) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,865 | 0 | A | C | 64.3% | 10.7 / 11.8 | 14 | intergenic (‑948/‑220) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 35,834 | 0 | A | . | 61.5% | 10.7 / 20.1 | 13 | intergenic (+65/+43) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 35,850 | 0 | C | T | 61.5% | 0.0 / 11.5 | 13 | intergenic (+81/+27) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 35,858 | 0 | T | A | 61.5% | 3.5 / 15.7 | 13 | intergenic (+89/+19) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 36,087 | 0 | A | G | 61.3% | 41.9 / 80.6 | 76 | C155C (TGT→TGC) | tpn | IS431mec transposase |
| * | CP000730 | 35,876 | 0 | C | T | 57.9% | 2.1 / 19.5 | 19 | intergenic (+107/+1) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 35,970 | 0 | T | C | 54.7% | 13.3 / 86.2 | 64 | E194E (GAA→GAG) | tpn | IS431mec transposase |
| * | CP000730 | 1,929,925 | 0 | T | A | 53.8% | ‑3.3 / 17.1 | 13 | intergenic (‑1008/‑160) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,928 | 0 | T | A | 53.8% | ‑3.0 / 17.1 | 13 | intergenic (‑1011/‑157) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,930 | 0 | T | A | 53.8% | ‑1.7 / 18.2 | 13 | intergenic (‑1013/‑155) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 35,814 | 0 | A | . | 53.3% | 19.1 / 31.6 | 15 | intergenic (+45/+63) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 35,817 | 0 | A | T | 53.3% | 6.4 / 17.0 | 15 | intergenic (+48/+60) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 76,295 | 0 | T | C | 53.3% | 20.9 / 82.1 | 60 | intergenic (+353/‑781) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase |