| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 468257 = | 94 (1.330) | 3 (0.050) | 3/246 | 10.6 | 3.4% | coding (638/792 nt) | USA300HOU_0443 | hypothetical lipoprotein |
| ? | CP000730 | 468356 = | 86 (1.340) | coding (737/792 nt) | USA300HOU_0443 | hypothetical lipoprotein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTACTTGGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGTTGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/468407‑468257‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttgttgaaaGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGATGAAATGATCAAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAGTGTTTTCA > CP000730/468356‑468494 TTACTTGGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCT < 1:616753/141‑1 ACTTGGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTT > 1:26277/1‑141 TTGGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTG > 1:368258/1‑141 TGGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATTTCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGT < 1:357474/141‑1 TGGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGT < 2:751942/141‑1 TGGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGT < 1:668706/141‑1 GGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGTT < 1:800749/141‑1 TTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGTTGAAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCAT > 2:294175/1‑141 CAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGTTGAAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATAC > 1:804282/1‑141 AAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGTTGAAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGT > 2:560479/1‑141 gTTGTTGAAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGATGAAATGATAAAAAATAAAAAAATGTGCAAAGAGATGTGACAAGATGAAG < 2:259624/140‑1 TTTGTTGAAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGATAAATTAAAATGTGTGGTTAGATGAAATGATCAAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAG < 2:508921/141‑1 TTGTTGAAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGATGAAATGATCAAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAGT < 1:226241/141‑1 GTTGAAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGATGAAATGATCAAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAGTGT > 1:279199/1‑141 TTGAAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGATGAAATGATCAAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAGTGTT > 2:576418/1‑141 AAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGATGAAATGATCGAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAGTGTTTTC < 2:799472/141‑1 AAGAAAAGGTGAGAATATTTATTTTACCGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTCGATGAAATGATCAAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAGTGTTTTCA < 2:79970/141‑1 AAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGATGAAATGATCAAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAGTGTTTTCA > 1:524345/1‑141 AAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGAT < 1:516454/84‑1 AAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGAT > 2:516454/1‑84 TTACTTGGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGTTGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/468407‑468257‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttgttgaaaGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGATGAAATGATCAAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAGTGTTTTCA > CP000730/468356‑468494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |