New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	739788 =	60 (0.850)	6 (0.090)	4/244	9.8	10.4%	intergenic (+15/+573)	pitA/sle1	possible PiT family inorganic phosphate transporter/possible LysM domain protein
	?	CP000730	739837 =	49 (0.770)					intergenic (+64/+524)	pitA/sle1	possible PiT family inorganic phosphate transporter/possible LysM domain protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTAACCGAGCTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAA  >  CP000730/739649‑739919                                                                                                                                            |                                                                                                                                    cTAACCGAGCTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAaaactaa                                                                                                                                    >  1:817184/1‑141 (MQ=255)     ccGAGCTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTCCTATTCTCTTTACTTAACTTATTTTTCTAATTTAAAATAAAACTAAACTg                                                                                                                                >  1:588275/1‑141 (MQ=255)      cGAGCTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGa                                                                                                                               <  2:161702/141‑1 (MQ=255)        aGCTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAAc                                                                                                                             <  1:5333/141‑1 (MQ=255)        aGCTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAAc                                                                                                                             >  2:271032/1‑141 (MQ=255)             aaGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAg                                                                                                                        >  1:752985/1‑141 (MQ=255)             aaGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAg                                                                                                                        >  1:84434/1‑141 (MQ=255)              aGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGt                                                                                                                       >  2:802429/1‑141 (MQ=255)               ggTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTa                                                                                                                      >  1:512622/1‑141 (MQ=255)                     aaaTGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACaa                                                                                                                >  2:400808/1‑141 (MQ=255)                      aaTGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAACCTGACCTTCATTATCACaaa                                                                                                               >  2:601460/1‑141 (MQ=255)                           aGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACatat                                                                                                          >  2:795519/1‑141 (MQ=255)                                 gcgcAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATggtggt                                                                                                    <  2:89939/141‑1 (MQ=255)                                   gcAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTAt                                                                                                  <  2:813085/141‑1 (MQ=255)                                     aaCGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTg                                                                                                >  2:186206/1‑141 (MQ=255)                                         aaTGATCATTACATGGGTGATTACATTATCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAgg                                                                                            >  2:775809/1‑140 (MQ=255)                                          aTGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGtt                                                                                           <  2:463053/141‑1 (MQ=255)                                          aTGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGtt                                                                                           <  1:713258/141‑1 (MQ=255)                                           tGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTc                                                                                          <  1:92562/141‑1 (MQ=255)                                            gATCATTACATTGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCa                                                                                         <  2:406638/141‑1 (MQ=255)                                             aTCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAg                                                                                        <  2:485879/141‑1 (MQ=255)                                                     aTGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTAt                                                                                >  2:19271/1‑141 (MQ=255)                                                             ttacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACatat                                                                                                          >  2:364518/1‑107 (MQ=255)                                                             ttacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACatat                                                                                                          <  1:364518/107‑1 (MQ=255)                                                             ttacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAg                                                                        >  1:205172/1‑141 (MQ=255)                                                                cattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATa                                                                     <  1:189028/141‑1 (MQ=255)                                                                   tacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACa                                                                  <  1:138047/141‑1 (MQ=255)                                                                   tacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACa                                                                  <  1:277561/141‑1 (MQ=255)                                                                      cTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACatat                                                               >  1:410491/1‑141 (MQ=255)                                                                         tttCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATAtttt                                                            >  1:652429/1‑141 (MQ=255)                                                                           tCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTtat                                                          >  2:354008/1‑141 (MQ=255)                                                                           tCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTtat                                                          <  2:404418/141‑1 (MQ=255)                                                                               cATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGaa                                                      >  2:83000/1‑141 (MQ=255)                                                                               cATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATACGGTTGTATTGAAGTTCAATTTTTTATGTAAGTAGATAACATACTTTATAGaa                                                      >  1:578524/1‑141 (MQ=255)                                                                                aTTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAAt                                                     >  1:204323/1‑141 (MQ=255)                                                                                aTTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAAt                                                     <  1:400808/141‑1 (MQ=255)                                                                                 ttGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAAtt                                                    <  2:490860/141‑1 (MQ=255)                                                                                  tGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTAAGTTTTTTATGTAAGTAGATAACATATTTTATAGAAttt                                                   >  2:699993/1‑141 (MQ=255)                                                                                      aGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGt                                               >  1:778177/1‑141 (MQ=255)                                                                                       gCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTa                                              >  2:90249/1‑141 (MQ=255)                                                                                          ggTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGaa                                           <  1:328668/141‑1 (MQ=255)                                                                                                       atataCTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACaaa                              >  2:657362/1‑141 (MQ=255)                                                                                                        tataCTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATAtggt                                                                                                       <  1:124892/67‑1 (MQ=255)                                                                                                        tataCTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATAtggt                                                                                                       >  2:124892/1‑67 (MQ=255)                                                                                                            cttaacttaTTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCAtt                         >  1:718990/1‑141 (MQ=255)                                                                                                             ttaacttaTTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCAttt                        <  2:346283/141‑1 (MQ=255)                                                                                                               aacttaTTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTa                      <  1:482929/141‑1 (MQ=255)                                                                                                                  ttaTTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAAtt                   <  1:186206/141‑1 (MQ=255)                                                                                                                     tttttCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTagg                >  2:761734/1‑141 (MQ=255)                                                                                                                        ttCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTaggagg             >  2:517609/1‑141 (MQ=255)                                                                                                                         tCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGc            <  2:532029/141‑1 (MQ=255)                                                                                                                         tCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGc            >  2:815208/1‑141 (MQ=255)                                                                                                                            aaTTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATAttt                                                             >  2:666683/1‑89 (MQ=255)                                                                                                                            aaTTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATAttt                                                             <  1:666683/89‑1 (MQ=255)                                                                                                                            aaTTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCtat         <  2:710797/141‑1 (MQ=255)                                                                                                                                 aaaaTAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTAtattat    >  2:450323/1‑141 (MQ=255)                                                                                                                                   aaTAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATaa  <  1:450323/141‑1 (MQ=255)                                                                                                                                   aaTAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATaa  >  1:708447/1‑141 (MQ=255)                                                                                                                                    aTAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGAc                                       <  1:181219/103‑1 (MQ=255)                                                                                                                                    aTAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGAc                                       >  2:181219/1‑103 (MQ=255)                                                                                                                                            |                                                                                                                                    CTAACCGAGCTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAA  >  CP000730/739649‑739919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.