| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2693372 | 26 (0.850) | 6 (0.210) | 5/254 | 3.5 | 19.2% | intergenic (+43/+34) | USA300HOU_2547/USA300HOU_2548 | TetR family transcriptional regulator/hypothetical protein |
| ? | CP000730 | = 2693412 | 26 (0.910) | coding (162/168 nt) | USA300HOU_2548 | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGATTGAAGGTTTTATACATTGGATAAAAGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2693226‑2693372‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aataaaaaACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAATATTGATTAATCTATGGAAAATGTTATCAATATCTTCGC < CP000730/2693412‑2693277 TGATTGAAGGTTTTATACATTGGATAAAAGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAA < 2:321779/141‑1TGATTGAAGGTTTTATACATTGGATAAAAGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACAGTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAA > 2:90839/1‑141 GGATAAAAGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAA < 1:359466/125‑1 GGATAAAAGATGAAAAAATTGACTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAA > 2:359466/1‑125 ATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGAATTCATTAACGTGTACA < 2:219864/141‑1 TTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACA < 2:287328/141‑1 GGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCG < 1:162508/141‑1 CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTA < 2:255707/141‑1 GAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGT < 2:341033/79‑1 GAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGT > 1:341033/1‑79 AAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAATATTGATTAATCTATGGAAAATGTTATCAATATCTTCGC > 2:309512/1‑141 TGATTGAAGGTTTTATACATTGGATAAAAGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2693226‑2693372‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aataaaaaACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAATATTGATTAATCTATGGAAAATGTTATCAATATCTTCGC < CP000730/2693412‑2693277 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |