New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 940821	22 (0.720)	3 (0.100)	3/258	4.5	13.0%	intergenic (+2/+54)	comA/USA300HOU_0905	hypothetical protein/hypothetical protein
	?	CP000730	= 940872	19 (0.650)					intergenic (+53/+3)	comA/USA300HOU_0905	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATGGTCGTGTTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATG  >  CP000730/940682‑940960                                                                                                                                            |                                                                                                                                            gATGGTCGTGTTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAg                                                                                                                                            <  1:362979/141‑1 (MQ=255)    ggTCGTGTTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAAc                                                                                                                                         <  1:146238/141‑1 (MQ=255)          gtTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAg                                                                                                                                   <  2:344148/141‑1 (MQ=255)               tGCGACAGCTGAACTGATTCATAGAGGTAAGTCGACAAATGTATGGGATATAAAAATTAAGAATGACAAATAATCATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTATAATAAAAGAACTGCTAGCTGaa                                                                                                                              <  2:97807/141‑1 (MQ=255)                   aCAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAgaatatgtta                                                                                                                          >  2:300678/1‑132 (MQ=255)                      gCTGAAATTATTAATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTAt                                                                                                                       <  2:183203/141‑1 (MQ=255)                          aaaTTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATgaga                                                                                                                   >  2:223693/1‑141 (MQ=255)                                    tCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAAc                                                                                                         <  2:49223/141‑1 (MQ=255)                                        ggTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACg                                                                                                     >  2:311169/1‑141 (MQ=255)                                         gTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACgg                                                                                                    >  1:34386/1‑141 (MQ=255)                                           aaGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCt                                                                                                  <  1:230791/141‑1 (MQ=255)                                                       gTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGttttttt                                                                                      >  1:226718/1‑141 (MQ=255)                                                                     aaTTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATAttgt                                                                        >  1:4292/1‑141 (MQ=255)                                                                             aTGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGttt                                                                >  2:245635/1‑141 (MQ=255)                                                                             aTGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGttt                                                                <  2:297246/141‑1 (MQ=255)                                                                                           ttaattaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGtt                                                  <  1:45654/141‑1 (MQ=255)                                                                                                         gCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCa                                    >  2:230267/1‑141 (MQ=255)                                                                                                                 cAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACg                            >  2:206601/1‑141 (MQ=255)                                                                                                                      gCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCAc                       <  2:25660/141‑1 (MQ=255)                                                                                                                      gCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCAc                       <  1:154207/141‑1 (MQ=255)                                                                                                                                          aaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCAACCCATAACATTTCTACCAAAt   >  1:306497/1‑141 (MQ=255)                                                                                                                                           aaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATg  <  1:155546/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                            GATGGTCGTGTTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATG  >  CP000730/940682‑940960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.