New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1205323	45 (0.960)	29 (0.870) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG	8/190	3.4	47.4%	intergenic (+459/‑365)	yfiE/lspA	possible lactoylglutathione lyase/A8 family signal peptidase II
	?	CP000730	= 1443739	NA (NA)					intergenic (‑312/+41)	USA300HOU_1341/brnQ2	IS1272 transposase/LIVCS family branched chain amino acid:cation symporter
Rejected: Coverage evenness skew score above cutoff.

CCAATTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTAC  >  CP000730/1205183‑1205459                                                                                                                                             |                                                                                                                                         ccAATTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGTACCCTAGGaa                                                                                                                                          >  1:514346/1‑141 (MQ=255)  cAATTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAg                                                                                                                                         <  1:374084/141‑1 (MQ=255)         gtgtAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCca                                                                                                                                  >  1:24092/1‑141 (MQ=255)               aCGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCAtcatca                                                                                                                            <  2:326321/141‑1 (MQ=255)                     cATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAtt                                                                                                                      >  1:24596/1‑141 (MQ=255)                       tGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCt                                                                                                                    >  1:452331/1‑141 (MQ=255)                        gTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTa                                                                                                                   <  2:159363/141‑1 (MQ=255)                                tattanaaGTATACAAAAGCAAAATCACATGTTAAGACGGAGCAGTAATCGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGATGCTGAAACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAtaaataga                                                                                                           <  1:21742/135‑8 (MQ=14)                                 ttttAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAAGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATAAATAGaa                                                                                                          <  2:109784/141‑1 (MQ=255)                                       aGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTAc                                                                                                    >  2:245932/1‑141 (MQ=255)                                             tAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAt                                                                                              >  1:367467/1‑141 (MQ=255)                                                    aaaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAg                                                                                       >  1:564253/1‑141 (MQ=255)                                                          aCATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgtg                                                                                           <  2:466329/131‑1 (MQ=255)                                                          aCATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgtg                                                                                           >  1:466329/1‑131 (MQ=255)                                                            aTGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCAt                                                                               >  2:34827/1‑141 (MQ=255)                                                                        agtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCATAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAtt                                                                   <  1:270156/141‑1 (MQ=255)                                                                           aTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCaa                                                                <  1:263977/141‑1 (MQ=255)                                                                           aTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCaa                                                                <  1:472889/141‑1 (MQ=255)                                                                             tAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATa                                                              <  2:433206/141‑1 (MQ=255)                                                                                tGGCGAGCCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATACAATActt                                                           <  1:576433/141‑3 (MQ=255)                                                                                tGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATACAATActt                                                           <  1:576450/141‑3 (MQ=255)                                                                                 ggCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATActtc                                                          <  2:185092/141‑4 (MQ=255)                                                                                 gacGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCGAGGAAGGGACCCATCATCAACAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATACAATActtc                                                          <  2:590585/139‑4 (MQ=255)                                                                                     agaCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTAt                                                      >  1:517025/1‑141 (MQ=255)                                                                                       aCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTg                                                    <  2:506848/141‑1 (MQ=255)                                                                                        cTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGt                                                   <  1:163698/141‑1 (MQ=255)                                                                                        cTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGt                                                   <  1:77777/141‑1 (MQ=255)                                                                                            tGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTtat                                                                                                              <  2:110563/78‑1 (MQ=255)                                                                                            tGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTtat                                                                                                              >  1:110563/1‑78 (MQ=255)                                                                                             gAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATaaa                                              >  1:311760/1‑141 (MQ=255)                                                                                             gAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATaaa                                              >  2:525112/1‑141 (MQ=255)                                                                                                     aGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAAc                                      <  2:24092/141‑1 (MQ=255)                                                                                                                aaGGCCGAGGCTGAGACGGCACCCTAGGAATGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATTGGCATAGCGAAGCCATTCAATACGAAGGATTGTATAAGTAGAGTACAGCAGTAAgtt                           <  2:241292/141‑3 (MQ=11)                                                                                                                aaGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAt                           <  1:361459/141‑1 (MQ=39)                                                                                                                 aGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCatcatc                                                                                                                             <  1:228307/42‑1 (MQ=255)                                                                                                                 aGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCatcatc                                                                                                                             >  2:228307/1‑42 (MQ=255)                                                                                                                 aGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATa                          >  1:103369/1‑141 (MQ=38)                                                                                                                     cGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGAATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAAttt                      <  2:367467/141‑1 (MQ=37)                                                                                                                      gAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAAtttt                     >  2:533775/1‑141 (MQ=38)                                                                                                                      gAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAAtttt                     >  2:533778/1‑141 (MQ=38)                                                                                                                        ggCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTa                   >  1:122441/1‑141 (MQ=38)                                                                                                                               aCGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGaa            <  2:47384/141‑1 (MQ=255)                                                                                                                                   cACCCTAGGAAGGGACCCGTCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTCAATTAGAAAata        <  1:200806/141‑1 (MQ=255)                                                                                                                                   cACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATGAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAata        >  2:528549/1‑141 (MQ=255)                                                                                                                                      ccTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCt     >  1:458371/1‑141 (MQ=255)                                                                                                                                         aGGAAGGGACCCGTCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTtac  <  2:332800/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                         CCAATTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTAC  >  CP000730/1205183‑1205459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.