New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1205323	45 (0.960)	29 (0.870) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG	8/190	3.4	45.3%	intergenic (+459/‑365)	yfiE/lspA	possible lactoylglutathione lyase/A8 family signal peptidase II
	?	CP000730	1426517 =	53 (1.140)					intergenic (‑248/+724)	pstS/yitL	phosphate ABC superfamily ATP binding cassette transporter, binding protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

AAAATTGTTAAGAAAATGTAAATATTAATTTTTGTTAATCTAAAAAATATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGT  >  CP000730/1426377‑1426656                                                                                                                                                |                                                                                                                                             aaaaTTGTTAAGAAAATGTAAATATTAATTTTTGTTAATCTAAAAAATATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTaaaaaa                                                                                                                                              >  2:28061/1‑141 (MQ=255)        ttAAGAAAATATAAATATTAATTTTTGTTAATCTAAAAAATATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAAcagcag                                                                                                                                       >  1:287755/1‑141 (MQ=255)         tAAGAAAATGTAAATATTAATTTTTGTTAATCTAAAAAATATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGt                                                                                                                                      >  1:179324/1‑141 (MQ=255)           aGAAAATGTAAATATAAAATTTTGTTAATCTAAAAAATATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAACCATCGAAATTTAAAAATGAATAC‑AAAAAT‑‑GGCTGGGACAAAAAAAAAAAAAAAAACAGCAGTaa                                                                                                                                    <  2:461690/141‑1 (MQ=255)            gAAAATGTAAATATTAATTTTTGTTAATCTAAAAAATATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAg                                                                                                                                   <  2:569998/141‑1 (MQ=255)                   tAAATATTAATTTTTGTTAATCTAAAAAATATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTATAAAAACAGCAGTAAGATAAttt                                                                                                                            >  1:498075/1‑141 (MQ=255)                   tAAATATTAATTTTTGTTAATCTAAAAAATATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAAttt                                                                                                                            >  2:20805/1‑141 (MQ=255)                   tAAATATTAATTTTTGTTAATCTAAAAAATATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAAttt                                                                                                                            >  2:115283/1‑141 (MQ=255)                         taaaTTTTTGTTAATCTAAAAAATATTGCTTAATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATAAATAC‑AAAAAT‑‑GGCTGGGACATAAAAAAAAAAAAAAACAGCAGTAAGATAATTTTC‑AAtt                                                                                                                     <  2:391994/139‑1 (MQ=38)                           aaTTTTTGTTAATCTAAAAAATATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAg                                                                                                                   >  2:281375/1‑141 (MQ=255)                              ttttGTTAATCTAAAAAATATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGaaa                                                                                                                >  2:246842/1‑141 (MQ=255)                                  tttAATCTAAAAAATATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGAT‑ATTTTC‑TAATTGAAAattat                                                                                                           <  1:225457/140‑4 (MQ=38)                                  gTTAATCTAAAAAATATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAattat                                                                                                           <  1:570323/141‑4 (MQ=38)                                      aTCTAAAAAATATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTa                                                                                                        <  1:394637/141‑1 (MQ=255)                                         tAAAAAATATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTActg                                                                                                     <  1:304259/141‑1 (MQ=255)                                           aaaaaTATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTActgct                                                                                                   >  1:450185/1‑141 (MQ=255)                                             aaaTAGTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATTATCGAAATTTAAATATGTACACAAAAAATGAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTActgc                                                                                                    <  1:451718/141‑1 (MQ=18)                                                tatTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTtct                                                                                              <  1:121229/141‑1 (MQ=255)                                                tatTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTtct                                                                                              <  1:592834/141‑1 (MQ=255)                                                tatTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTtct                                                                                              <  1:385136/141‑1 (MQ=255)                                                   tGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTCAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTa                                                                                           <  2:599285/141‑1 (MQ=255)                                                            aGTAAAATTAAAATGCTTCCTGAAAAATTATCGAAATTTAAATATGTACACAAAAAATGAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTtata                                                                                     <  2:458005/141‑1 (MQ=17)                                                            aGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACaa                                                                                  <  1:416182/141‑1 (MQ=255)                                                               aaaattaaaatGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATAc                                                                               >  2:193768/1‑141 (MQ=255)                                                               aaaattaaaatGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATAc                                                                               >  2:208658/1‑141 (MQ=255)                                                                  attaaaatGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTc                                                                            >  2:267312/1‑141 (MQ=255)                                                                   ttaaaatGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCg                                                                           >  1:87258/1‑141 (MQ=255)                                                                       aatGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTAtt                                                                       <  2:463066/141‑1 (MQ=255)                                                                       aatGCTTACTGAAAAATCATAGAAATTTAAATATAAATAC‑AAAAAT‑‑GGCTGGTACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATAcgaagtatt                                                                       <  2:64574/141‑9 (MQ=18)                                                                        atGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTg                                                                      >  1:290143/1‑141 (MQ=255)                                                                          gCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGATGTGCTCTATTTATACAATCCTTCGTATTGaa                                                                    >  1:597757/1‑141 (MQ=255)                                                                            ttCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCCCTATTTATACAATACTTCGTATTGAATg                                                                  <  1:590224/141‑1 (MQ=255)                                                                            ttCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATAAATAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATg                                                                  <  2:117880/141‑1 (MQ=255)                                                                              ccTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCATAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                                                                <  2:245969/141‑1 (MQ=255)                                                                                     aaTCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCtt                                                         >  1:570402/1‑141 (MQ=255)                                                                                         atcGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTGcc                                                     >  2:372378/1‑141 (MQ=255)                                                                                                   aaaTATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTGCCCGTCTGTcag                                           >  2:40757/1‑140 (MQ=255)                                                                                                         gcttAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTGCCCGTCTGTCACATTACt                                     >  2:71975/4‑141 (MQ=255)                                                                                                           aTAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTGCCCGTCTGTCACATTACTGt                                   <  2:182146/141‑1 (MQ=255)                                                                                                            tAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTGCCCGTCTGTCACATTACTGt                                   >  2:199173/1‑140 (MQ=255)                                                                                                            tAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTGCCCGTCTGTCACATTACTGt                                   <  1:199173/140‑1 (MQ=255)                                                                                                                 aaaaT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTGCCCGTCTGTCACATTACTGTAAAAt                              <  1:543646/141‑1 (MQ=255)                                                                                                                  aaaT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTtat                                                                                      <  2:153436/84‑1 (MQ=35)                                                                                                                  aaaT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTtat                                                                                      >  1:153436/1‑84 (MQ=35)                                                                                                                  aaaT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTGCCCGTCTGTCACATTACTGTAAAAtt                             <  1:210853/141‑1 (MQ=255)                                                                                                                     t‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCta                          <  1:17377/141‑1 (MQ=255)                                                                                                                        ggCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCtat                         >  2:478934/1‑141 (MQ=255)                                                                                                                                  tAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAAtt               <  2:573002/141‑1 (MQ=255)                                                                                                                                     aTCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCGTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAAttttt            <  1:492147/141‑1 (MQ=255)                                                                                                                                         cTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTtgatg        <  1:20805/141‑1 (MQ=40)                                                                                                                                          tAAAAAAACAAAAGTAAGATAATTTTG‑AATTAGAAAATATCTTACTGCTGTTAACAAGATATACAATAGTTCGTATTGACTGGCTTCGCTTTTCCCGTCTGAAACACAACAGAAAAATTCAATAAATAAAATTTTtgatga       >  2:346088/1‑141 (MQ=2)                                                                                                                                            aaaaaaCAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACg     >  2:98530/1‑141 (MQ=37)                                                                                                                                               aaaCAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGt  >  1:507587/1‑141 (MQ=39)                                                                                                                                                |                                                                                                                                             AAAATTGTTAAGAAAATGTAAATATTAATTTTTGTTAATCTAAAAAATATTGCTTCATTAGTAAAATTAAAATGCTTCCTGAAAAATCATCGAAATTTAAATATGAATAC‑AAAAAT‑‑GGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGT  >  CP000730/1426377‑1426656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.