New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 1205383 =84 (1.050)36 (0.550)
+TTCCTAGGGTGCCGTCTCAGCCTCG
6/218 9.2 41.5% intergenic (+519/‑305) yfiE/lspA possible lactoylglutathione lyase/A8 family signal peptidase II
?CP000730 2478476 = 41 (0.510)intergenic (+363/+708) USA300HOU_2340/htrB hypothetical membrane protein/hemin ABC superfamily ATP binding cassette transporter, ABC protein
Rejected: Coverage evenness skew score above cutoff.

TGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGACAAAT  >  CP000730/2478337‑2478615
                                                                                                                                           |                                                                                                                                           
tGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGt                                                                                                                                            >  1:462868/1‑141 (MQ=35)
 gCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTc                                                                                                                                           <  2:441837/141‑1 (MQ=35)
 gCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTc                                                                                                                                           >  1:401832/1‑141 (MQ=35)
     aTCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCg                                                                                                                                       >  2:790755/1‑141 (MQ=33)
       cTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGAc                                                                                                                                     <  2:490246/141‑1 (MQ=32)
        tGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCTCCTGTCTTCGACt                                                                                                                                    >  2:822552/1‑141 (MQ=17)
          gCACATTCCTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTgg                                                                                                                                  <  1:533877/141‑1 (MQ=11)
                                                                         ctcAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAAt                                                                   >  2:546118/1‑141 (MQ=32)
                                                                         ctcAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAAt                                                                   <  1:985853/141‑1 (MQ=32)
                                                                         ctcAGCCACCCCAAACGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCACTGTCTTCGACTGGCACTGCTCACTCCGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAAt                                                                   >  2:874959/1‑141 (MQ=255)
                                                                            aGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACt                                                                >  2:575716/1‑141 (MQ=32)
                                                                              ccatcccAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACttt                                                              >  2:637852/5‑141 (MQ=25)
                                                                                 ccccAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACTTNTTAACAGGTAATTTTACTTTTAAATACTTTaaa                                                           <  1:790755/141‑1 (MQ=25)
                                                                                     aaCCGGCACATTGTTGTAAGCTGACTATACGTCAGCTTCTGTGTTGGGGCCCCTGCCTTCGCCTGGCACTGCCCCCTCAGGCGTCTCGCCATTAATACTACGTATTAACATGTAATCTTACTTTTAAATACTTTacaacaa                                                       >  2:428515/1‑141 (MQ=11)
                                                                                       ccGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATa                                                     >  1:601914/1‑141 (MQ=40)
                                                                                        cGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATaa                                                    <  1:581090/141‑1 (MQ=255)
                                                                                            acaTTGTTGTAAGCTGACTATATGTCAGCTCCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAACAAAATAAGaca                                                >  2:788889/1‑141 (MQ=255)
                                                                                                tgttgtAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACttt                                            >  1:458700/1‑141 (MQ=255)
                                                                                                     tAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGTACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCa                                       <  2:308814/141‑1 (MQ=255)
                                                                                                     tAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCa                                       >  1:675236/1‑141 (MQ=255)
                                                                                                     tAAGCTGACTATATGTCAGCTTCAGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTCTTAAATACTTTCAAAAAATAAGACACTTTGGccc                                       >  2:877221/1‑140 (MQ=255)
                                                                                                              tataTGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGcc                              <  1:178804/141‑1 (MQ=255)
                                                                                                               tatagTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAACTAAGACACTTTGGAACACTTCAGccg                             >  2:799995/5‑140 (MQ=14)
                                                                                                               atatGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCa                             >  2:928184/1‑141 (MQ=255)
                                                                                                                  tGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGa                          <  2:60687/141‑1 (MQ=255)
                                                                                                                   gTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGAt                         <  2:86344/141‑1 (MQ=255)
                                                                                                                       gcctttgggtTGGGGCCCCCGTCTTCGACCGGCACCGCCCCCTCAAGAGGCATGCATGTAATACCTCCGATTAACATGTTATTTTTCTTTTAAAAACCTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACaa                     <  1:826265/133‑1 (MQ=12)
                                                                                                                       gCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTaa                                                                     <  1:390004/93‑1 (MQ=33)
                                                                                                                       gCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTaa                                                                     >  2:390004/1‑93 (MQ=33)
                                                                                                                            tgtgTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTAc                >  2:767961/1‑141 (MQ=255)
                                                                                                                            tgtgTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTAc                >  2:572296/1‑141 (MQ=255)
                                                                                                                            tgtgTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTAc                >  1:740028/1‑141 (MQ=255)
                                                                                                                             gtgtTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGTAAAGATACAATTTACa               >  1:566493/1‑141 (MQ=255)
                                                                                                                               gtTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTACaaa             >  1:859596/1‑141 (MQ=255)
                                                                                                                                  ggggCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTACAAATAg          <  1:546118/141‑1 (MQ=255)
                                                                                                                                   gggCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATaa                                                    >  1:358345/1‑98 (MQ=39)
                                                                                                                                   gggCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATaa                                                    <  2:358345/98‑1 (MQ=39)
                                                                                                                                     gCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGa       <  2:993778/141‑1 (MQ=255)
                                                                                                                                      ccccTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGAc      <  1:306416/141‑1 (MQ=255)
                                                                                                                                        ccTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGACaa    >  1:476699/1‑141 (MQ=255)
                                                                                                                                          tGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGACAAAt  <  1:315465/141‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                           
TGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGACAAAT  >  CP000730/2478337‑2478615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.