| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP000730 | 2,710,898 | (T)6→7 | coding (29/1812 nt) | oatA ← | possible acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 2,710,892 | 1 | . | T | 95.7% | 63.5 / ‑3.4 | 23 | coding (35/1812 nt) | oatA | possible acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (16/6); total (17/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AACCTGAAATAACGAAGAATGTATCTACTCCTAAAAAGCCCCCACTTAACCATTGTGCATTCAAGTGATAAATAATGATTCCTATAACTGCGAATGCCCTCAATCCATCTAATCCAGGTAAGTATCGCGGGGAATACA‑TTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAACGCCCCATTTATTTTTCTCTATTTTGTAGCATATCACAATATTTTTGAAAATAAAATATTGCACTGATTTTCATTAATTGATTTAACCCTTA > CP000730/2710755‑2711027 | aaCCTGAAATAACGAAGAATGTATCTACTCCTAAAAAGCCCCCACTTAACCATTGTGCATTCAAGTGATAAATAATGATTCCTATAACTGCGAATGCCCTCAATCCATCTAATCCAGGTAAGTATCGCGGGGAATACA‑ttt < 2:319224/141‑1 (MQ=255) aagaaTGTATCTACTCCTAAAAAGCCCCCACTTAACCATTGTGCATTCAAGTGATAAATAATGATTCCTATAACTGCGAATGCCCTCAATCCATCTAATCCGGGTAAGTATCGCGGGGAATACA‑TTTTTTCTAAACGTTTa > 1:68309/1‑141 (MQ=255) agaaTGTATCTACTCCTAAAAAGCCCCCACTTAACCATTGTGCATTCAAGTGATAAATAATGATTCCTATAACTGCGAATGCCCTCAATCCATCTAATCCAGGTGAGTATCGCGGGGAATACATTTTTTTCTAAACGTTTa < 1:76137/141‑1 (MQ=255) tCTACTCCTAAAAAGCCCCCACTTAACCATTGTGCATTCAAGTGATAAATAATGATTCCTATAACTGCGAATGCCCTCAATCCATCTAATCCAGGTAAGTATCGCGGGGAATACATTTTTTTCTAAACGTTTAAAGTCttt < 1:113634/141‑1 (MQ=255) ccACTTAACCATTGTGCATTCAAGTGATAAATAATGATTCCTATAACTGCGAATGCCCTCAATCCATCTAATCCAGGTAAGTATCGCGGGAAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATaaa > 2:376592/1‑141 (MQ=255) aaCCATTGTGCATTCAAGTGATAAATAATGATTCCTATAACTGCGAATGCCCTCAATCCATCTAATCCAGGTAAGTATCGCGGGGAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAACGcccc > 2:59604/1‑141 (MQ=255) aTTCAAGTGATAAATAATGATTCCTATAACTGCGAATGCCCTCAATCCATCTAATCCAGGTAAGTATCGCGGGGAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAACGCCCCATTTATTTTtc > 2:21079/1‑141 (MQ=255) tCAAGTGATAAATAATGATTCCTATAACTGCGAATGCCCTCAATCCATCTAATCCAGGTAAGTATCGCGGGGAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAACGCCCCATTTATTTTtctc < 1:183190/141‑1 (MQ=255) gTGATAAATAATGATTCCAATAACTGCGAATGCCCTCACTCCATCTACTCCAGGTAAGTATCGCGGGGAATACATTTTTTTCGAAACGTTTACAGTCTTTTGTATCCATGTTAATAAACGCCCCATTTATTTTTCTCTAtt > 2:262957/1‑141 (MQ=255) taaataaTGATTCCTATAACTGCGAATGCCCTCAATCCATCTAATCCAGGTAAGTATCGCGGGGAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTAt < 2:398177/101‑1 (MQ=255) taaataaTGATTCCTATAACTGCGAATGCCCTCAATCCATCTAATCCAGGTAAGTATCGCGGGGAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTAt > 1:398177/1‑101 (MQ=255) ataatGATTCCTATAACTGCGAATGCCCTCAATCCATCTAGTCCAGGTAAGTATCGCGGGGAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAACGCCCCATTTATTTTTCTCTATTTTGTAGc > 1:419042/1‑141 (MQ=255) aTTCCTATAACTGCGAATGCCCTCAATTCATCTAATCCAGGTAAGTATCGCGGGGAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAACGCCCCATTTATTTTTCTCTATTTTGTAGCATATca > 2:275419/1‑141 (MQ=255) taACTGCGAATGCCCTCAATCCATCTAATCCAGGTAAGTATCGCGGGGAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAACGCCCCATTTATTTTTCTCTATTTTGTAGCATATCACAATAtt > 1:69272/1‑141 (MQ=255) cGAATGCCCTCAATCCATCTAATCCAGGTAAGTATCGCGGGGAATACATTTTTTTCTAAATGTTTAAAGTCATTTGTATCCATGTTAATAAACGCCCAATTTATTTTTCTCTATTTTATAGAATTTCACAATATTTTTGaa > 2:103013/1‑141 (MQ=255) ccATCTAATCCAGGTAAGTATCGCGGGGAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAACGCCCCATTTATTTTTCTCTATTTTGTAGCATATCACAATATTTTTGAAAATAAAATATTGCa < 2:381811/141‑1 (MQ=255) aTCTAATCCAGGTAAGTATCGCGGGGAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAACGCCCCATGTATTTTTCTCTATTTTGTAGCATATCACAATATCTTTGAAAATAAAATATTGCACt < 2:429569/141‑1 (MQ=255) tCTAATCCAGGTAAGTATCGCGGGGAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAACGCCCCATTTATTTTTCTCTATTTTGTAGCATATCACAATATTTTTGAAACTAAAATATTGCACTg > 2:418007/1‑141 (MQ=255) cTAATCCAGGTAAGTATCGCGGGGAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAACGCCCCATTTATTTTTCTCTATTTTGTAGAATATCACAATATTTTTGAAAATAAAATATTGctttga > 1:200462/1‑136 (MQ=255) tAATCCAGGTAAGTATCGCGGGGAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAACGCCCCATTTATTTTTCTCTATTTTGTAGCATATCACAATATTTTTGAAAATAAAATATTGCACTGAt > 1:381839/1‑141 (MQ=255) aaTCCAGGTAAGTATCGCGGGGAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAACGCCCCATTTATTTTTCTCTATTTTGTAGCATATCACAATATTTTTTTTTTTTTAATATTGCACTGAtt > 2:149851/1‑141 (MQ=255) aaGTATCGCGGGGAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAACGCCCCATTTATTTTTCTCTATTTTGTAGCATATCACAATATTTTTGAAAATAAAATATTGCACTGATTTTCATTAAt > 1:121015/1‑141 (MQ=255) gcgGGGAATACATTTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAAAGCCCCATTTATTATTTACTATTTGGTAGCATAGCACAATATTTTTGAATATAAAATATTGCACTGATTTTCATTAATTGATTTa > 1:237122/1‑141 (MQ=255) aTACATTTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAACGCCCCATTTATTTTTCTCTATTTTGTAGCATATCACAATATTTTTGAAAATAAAATATTGCACTGATTTTCATTAATTGATTTAACCCtta > 1:171290/1‑141 (MQ=255) | AACCTGAAATAACGAAGAATGTATCTACTCCTAAAAAGCCCCCACTTAACCATTGTGCATTCAAGTGATAAATAATGATTCCTATAACTGCGAATGCCCTCAATCCATCTAATCCAGGTAAGTATCGCGGGGAATACA‑TTTTTTCTAAACGTTTAAAGTCTTTTGTATCCATGTTAATAAACGCCCCATTTATTTTTCTCTATTTTGTAGCATATCACAATATTTTTGAAAATAAAATATTGCACTGATTTTCATTAATTGATTTAACCCTTA > CP000730/2710755‑2711027 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |