New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 536990	37 (1.070)	5 (0.150)	5/262	4.3	12.0%	intergenic (+183/‑128)	rplY/pth	ribosomal protein L25/aminoacyl‑tRNA hydrolase
	?	CP000730	= 1995778	37 (1.090)					intergenic (+31/+62)	USA300HOU_1855/USA300HOU_t0025	IS1181 transposase/tRNA‑Leu
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/536921‑536990 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttGGTTCTCCACCAAATGTGGTGGGTATATAATTTAAAGAACTATTTTTAAAATACAACTTTTAGAGTTTTTATTATTAGGCGGCCAGTCCATTATTGGGCTTGGTTGTCTTCTTTTT  <  CP000730/1995778‑1995663                                                                                                                                                                                            TTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGATATTAAACTCAACAATGATACATCATAAAAATTGGTTCTCCACCAAATGTGGTGGGTATATAATTTAAAGAACTA‑TTTTAAATTACAACTTTTAGAGTTTTTAT                                              >  1:146285/1‑141      CTAAAGTTTAATTAATTTTAGTGAGTAAAAGATATTAAACTCAACAATGATACATCATAAAAATTGGTTCTCCACCAAATGTGGTGGGTATATAATTTAAAGAACTA‑TTTTAAATTACAACTTTTAGAGTTTTTATTATTA                                         <  2:146285/141‑1                         AGTGAGTAAAAGATATTAAACTCAACAATGATACATCATAAAAATTGGTTCTCCACCAAATGTGGTGGGTATATAATTTAAAGAACTA‑TTTTAAATTACAACTTTTAGAGTTTTTATTATTAGGCGGCCAGTCCATTATTG                      <  1:402700/141‑1                                    gatATTAAACTCAACAATGATACATCATAAAAATTGGTTCTCCACCAAATGTGGTGGGTATATAATTTAAAGAACTA‑TTTTAAATTACAACTTTTAGAGTTTTTATTATTAGGCGGCCAGTCCATTATTGGGCTTGGTTGT           <  2:262547/138‑1                                             CTCAACAATGATACATCATAAAAATTGGTTCTCCACCAAATGTGGTGGGTATATAATTTAAAGAACTA‑TTTTAAATTACAACTTGTAGAGTTTTTATTATTAGGCGGCCAGTCCATTATTGGGCTTGGTTGTCTTCTTTTT  <  1:116691/141‑1                                                                                                                                                                                            TTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/536921‑536990 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttGGTTCTCCACCAAATGTGGTGGGTATATAATTTAAAGAACTATTTTTAAAATACAACTTTTAGAGTTTTTATTATTAGGCGGCCAGTCCATTATTGGGCTTGGTTGTCTTCTTTTT  <  CP000730/1995778‑1995663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.