New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1287796 =	16 (0.460)	3 (0.090)	3/246	5.0	12.0%	intergenic (+44/‑246)	dnaE1/rimP	DNA‑directed DNA polymerase III alpha subunit/hypothetical protein
	?	CP000730	1287846 =	29 (0.910)					intergenic (+94/‑196)	dnaE1/rimP	DNA‑directed DNA polymerase III alpha subunit/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCGAATTTACCAGATAAAGCTCAACTTTCGATATTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCATAAACTTATGCTATAATTAAGTTGCTTAAAAATTAGTGAACTC  >  CP000730/1287707‑1287985                                                                                                                                            |                                                                                                                                            aCCGAATTTACCAGATAAAGCTCAACTTTCGATATTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTc                                                                                                                                            >  1:18568/1‑141 (MQ=255)                       cAACTTTCGATATTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCtt                                                                                                                                    <  2:91893/127‑1 (MQ=255)                       cAACTTTCGATATTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCtt                                                                                                                                    >  1:91893/1‑127 (MQ=255)                             tCGATATTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTaa                                                                                                                >  1:315535/1‑141 (MQ=255)                                  atTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTg                                                                                                           <  2:423231/141‑1 (MQ=255)                                            tAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGa                                                                                                 <  2:105976/141‑1 (MQ=255)                                                  gAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAAc                                                                                           <  1:349389/141‑1 (MQ=255)                                                       aatCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTa                                                                                      >  1:166446/1‑141 (MQ=255)                                                         tCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACa                                                                                    <  2:424370/141‑1 (MQ=255)                                                                   tatttaATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTg                                                                          >  2:275011/1‑141 (MQ=255)                                                                              tATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGa                                                               >  2:123497/1‑141 (MQ=255)                                                                                    gtagtaAAAGAAATACAAAATTGTTGCTTGACACAAAATTATGCTCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACACACTTTTACAAGAATCTCTGATTAATAGTGAAGTCAt                                                         <  2:225537/141‑1 (MQ=255)                                                                                           aaGACATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTc                                                  <  2:386387/141‑1 (MQ=255)                                                                                           aaGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTc                                                  <  1:100930/141‑1 (MQ=255)                                                                                           aaGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTc                                                  >  1:426790/1‑141 (MQ=255)                                                                                                 tACAAAATTGGTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACATACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCAt                                            <  2:60021/141‑1 (MQ=255)                                                                                                   taaaaTTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTTCGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCATaa                                          >  1:336100/2‑141 (MQ=255)                                                                                                        ttgttgCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCATAAACTTa                                     <  2:190282/141‑1 (MQ=255)                                                                                                                      aaaaTTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGt                                                     >  1:131285/1‑111 (MQ=255)                                                                                                                      aaaaTTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGt                                                     <  2:131285/111‑1 (MQ=255)                                                                                                                      aaaaTTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCATAAACTTATGCTATAATTAAGt                       <  1:167886/141‑1 (MQ=255)                                                                                                                        aaTTATGACCGTCTTTCTCTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAACCATAAACTTATGCTATACTTAAGTTg                     <  2:40730/141‑1 (MQ=255)                                                                                                                          ttATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCa                                             <  1:436788/115‑1 (MQ=255)                                                                                                                          ttATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCa                                             >  2:436788/1‑115 (MQ=255)                                                                                                                          ttATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCATAAACTTATGCTATAATTAAGTTGCt                   <  2:167013/141‑1 (MQ=255)                                                                                                                          ttATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCATAAACTTATGCTATAATTAAGTTGCt                   <  1:139424/141‑1 (MQ=255)                                                                                                                           tATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTAAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCATAAACTTATGCTATAATTAAGTTGCtt                  <  2:18568/141‑1 (MQ=255)                                                                                                                             tGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAg                                                                                  <  2:301848/75‑1 (MQ=255)                                                                                                                             tGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAg                                                                                  >  1:301848/1‑75 (MQ=255)                                                                                                                                         ttttCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCATa                                           >  1:107615/1‑102 (MQ=255)                                                                                                                                         ttttCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCATa                                           <  2:107615/102‑1 (MQ=255)                                                                                                                                           ttCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCATAAACTTATGCTATAATTAAGTTGCTTAAAAATTAGTGAACTc  >  1:237375/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                            ACCGAATTTACCAGATAAAGCTCAACTTTCGATATTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCATAAACTTATGCTATAATTAAGTTGCTTAAAAATTAGTGAACTC  >  CP000730/1287707‑1287985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.