New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2431654	42 (1.220)	7 (0.230) +CTATGGAGTCGATGGGGT	5/230	3.8	18.4%	intergenic (+1/+646)	USA300HOU_2294/USA300HOU_2296	transcriptional regulator/hypothetical membrane protein
	?	CP000730	2432295 =	30 (0.870)					intergenic (+642/+5)	USA300HOU_2294/USA300HOU_2296	transcriptional regulator/hypothetical membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCCTAATACTGATGCGCTAATTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAATTGTTGAACCTAGGTTTCTTCCAGATTTTAAATAAGTGAAAACTAATATGATGGATAGTATGAGATATGG  >  CP000730/2432157‑2432434                                                                                                                                           |                                                                                                                                            aTCCTAATACTGATGCGCTAATTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCttt                                                                                                                                           <  1:302559/141‑1 (MQ=255)      aaTACTGATGCGCTAATTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTa                                                                                                                                      >  2:365/1‑141 (MQ=255)       aTACTGATGCGCTAATTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTAc                                                                                                                                     >  1:395898/1‑141 (MQ=255)           tGATGCGCTAATTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCAt                                                                                                                                 <  1:191174/141‑1 (MQ=255)            gATGCGCTAATTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATa                                                                                                                                <  1:219321/141‑1 (MQ=255)              tGCGCTAATTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATaaa                                                                                                                              <  1:231375/141‑1 (MQ=255)               gcgcTAATTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAAt                                                                                                                             >  2:76868/1‑141 (MQ=255)                  cTAATTGTATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACt                                                                                                                          <  1:61112/141‑1 (MQ=255)                  cTAATTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACt                                                                                                                          <  2:296734/141‑1 (MQ=255)                  cTAATTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACt                                                                                                                          <  1:385179/141‑1 (MQ=255)                     aTTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACttat                                                                                                                       >  1:58852/1‑141 (MQ=255)                                  ttattCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACg                                                                                                          >  1:70986/1‑141 (MQ=255)                                   tattCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACga                                                                                                         <  1:21982/141‑1 (MQ=255)                                             cATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACaaa                                                                                               <  2:401581/141‑1 (MQ=255)                                                              cAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCCTTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATCATTTGCTATATGTa                                                                              >  1:409933/1‑141 (MQ=255)                                                                   aaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCa                                                                         >  2:169449/1‑141 (MQ=255)                                                                       tGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAAttg                                                                     <  2:419341/141‑1 (MQ=255)                                                                        gATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAAttgt                                                                    >  2:395851/1‑141 (MQ=255)                                                                           ttCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAATTGTTGa                                                                 <  2:102551/141‑1 (MQ=255)                                                                                    ttatttgatAGAAATCAGCTTTTTTTTTTTTTTTTAAACTTAATGTCCCGACCTCTTTATCTACGTATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGTTATATGTAATGCAATTGTTGAACTTATGtt                                                        >  2:16621/8‑141 (MQ=255)                                                                                      aattaatAGAAATCAGCTTTTTTCATTTCCTAAAAACTTAAAGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTACTATATGTAATACAATTGTTGAACCTAGGTttc                                                      >  2:145505/1‑141 (MQ=255)                                                                                         taatAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAATTGTTGAACCTAGGTttcttc                                                   <  1:142603/141‑1 (MQ=255)                                                                                           atAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAATTGTTGAACCTAGGTTTCTTCCa                                                 <  2:6336/141‑1 (MQ=255)                                                                                                     gCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAATTGTTGAACCTAGGTTTCTTCCAGATTTTAAAt                                       >  1:86141/1‑141 (MQ=255)                                                                                                                           ttAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAATTGTTGAACCTAGGTTTCTTCCAGATTTTAAATAAGTGAAAACTAATATGATGGa                 >  1:137016/1‑141 (MQ=255)                                                                                                                             aaTGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAATTGTTGAACCTAGGTTTCTTCCAGATTTTAAATAAGTGAAAACTAATATGATGGATa               <  1:268760/141‑1 (MQ=255)                                                                                                                               tGTCCCGCCCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAATTGTTGAACCTCGGTTTCTTCCAGACTTTAAATAAGTGAAAACTGAGATGATGGATAGt             >  1:346773/1‑141 (MQ=255)                                                                                                                                 tCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAATTGTTGAACCTAGGTTTCTTCCAGATTTTAAATAAGTGAAAACTAATATGATGGATAGTAt           <  2:341896/141‑1 (MQ=255)                                                                                                                                          ctTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAATTGTTGAACCTAGGTTTCTTCCAGATTTTAAATAAGTGAAAACTAATATGATGGATAGTATGAGATATgg  <  2:298845/141‑1 (MQ=255)                                                                                                                                          ctTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAATTGTTGAACCTAGGTTTCTTCCAGATTTTAAATAAGTGAAAACTAATATGATGGATAGTATGAGATATgg  >  2:50031/1‑141 (MQ=255)                                                                                                                                           |                                                                                                                                            ATCCTAATACTGATGCGCTAATTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAATTGTTGAACCTAGGTTTCTTCCAGATTTTAAATAAGTGAAAACTAATATGATGGATAGTATGAGATATGG  >  CP000730/2432157‑2432434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.